Omics · study · 2026
A conserved HAND2-BMP5-SMAD1/5/9 axis drives hepatic stellate cell activation and extracellular matrix overproduction in multiple fibrotic etiologies
Listed in NCBI GEO
Hepatic stellate cell (HSC) activation is a key driver of liver fibrogenesis, but the transcriptional response to bone morphogenetic protein 5 (BMP5) in these cells has not been systematically characterized.
Description
To address this, we performed RNA‑sequencing on the human LX‑2 hepatic stellate cell line following stimulation with recombinant BMP5 protein, compared with vehicle‑treated controls. Each condition included five independent biological replicates to ensure statistical robustness.
Total RNA was extracted, and strand‑specific libraries were prepared for high‑throughput sequencing. This dataset enables the genome‑wide identification of differentially expressed genes, pathway enrichment analyses, and the delineation of BMP5‑regulated networks in HSCs. Our transcriptomic profiles provide a comprehensive resource for understanding the molecular actions of BMP5 in hepatic fibrosis and may reveal potential targets for therapeutic intervention.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE341nnn/GSE341139 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341139 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1499629 ncbi.nlm.nih.gov/bioproject/PRJNA1499629 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE341139 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |