Table · dataset · 2026
Public FDA MRSP-detection boundary benchmark derived package
Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.32569260.v7
Description
<p dir="ltr">Derived data and code supporting the Microbial Genomics manuscript MGEN-D-26-00487 (de Souza and Santoro).</p><p dir="ltr"><br></p><p dir="ltr">The current resubmission archive is MGEN_REPRODUCIBILITY_PACKAGE_20260927.zip (373,741,668 bytes; SHA-256: 0c9cf36312858a5e05a91c65fdad9f5ffa3ad91f2e03097ac35a4c34c47b31bf). It contains 594 files, including the September 2026 corrected training-only restricted-shell analysis, training-only pangenome dictionary, model input matrices, fitted models, frozen predictions, outcome extract, evaluation results, analysis code, provenance receipts, software records, a computational protocol and the current four main-figure PDFs.</p><p dir="ltr"><br></p><p dir="ltr">Start with README.md, COMPUTATIONAL_PROTOCOL.md, DISTRIBUTION_NOTE.md and POSTREVIEW_CLARIFICATIONS_20260927.md.
The historical June materials and July repeated-split addendum are included within this comprehensive archive and are labelled separately from the corrected training-only analysis.</p><p dir="ltr"><br></p><p dir="ltr">This version clarifies that the Table S11 tie-resampling intervals combine group-resampling and tie-order variability and are descriptive, adds the supplementary-number crosswalk, and adds the current four main-figure PDFs.
Read the rest (3 more)
Figure 1 now labels the 2,279 genomes as candidate assemblies. Previously deposited scientific data, fitted models, frozen predictions, numerical results, executable scripts and frozen execution notes are unchanged from version 6. Current distribution checksums are provided in PAYLOAD_MANIFEST.json and SHA256SUMS.txt.
Historical execution receipts retain their original run hashes; the distribution note explains documentation changes.</p><p dir="ltr"><br></p><p dir="ltr">The deposit supports checks from the deposited matrices and frozen predictions. Source genomes and the FDA workbook are not redistributed, raw per-assembly projection directories are not included, and HiPerGator-specific paths and execution bindings require adaptation.
The computational protocol documents these reproducibility limits.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.32569260.v7 ↗
DOI / persistent id · from datahub hku hk
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from datahub hku hk
Topics
- From keywords
- Astronomy & Astrophysics · Bacteriology · Bacteriology · Bacteriology · Chemistry · Chemistry · Computer Science & AI · Computer Science & AI · Earth & Environmental Science · Earth & Environmental Science · Earth & Environmental Science · Economics & Finance · Economics & Finance · Engineering · Engineering · Genomics and transcriptomics · Genomics and transcriptomics · Genomics and transcriptomics · Humanities · Humanities · Life Sciences · Life Sciences · Life Sciences · Materials Science · Mathematics & Statistics · Medicine & Health · Medicine & Health · Ocean & Atmospheric Science · Psychology & Behavioral Science · Social Science · Social Science · Translational and applied bioinformatics · Translational and applied bioinformatics · Translational and applied bioinformatics · Veterinary bacteriology · Veterinary bacteriology · Veterinary bacteriology
- Inferred from text
- Tabular 65%
Provenance · 3 source records, 43 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| HKU DataHub | oai:figshare.com:article/32569260 | 7 d ago | JSON v1 |
| figshare | oai:figshare.com:article/32569260 | 7 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/32569260 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].anzsrc:field:300903 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Veterinary bacteriology'] |
| concepts[field].anzsrc:field:300903 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Veterinary bacteriology'] |
| concepts[field].anzsrc:field:300903 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Veterinary bacteriology'] |
| concepts[field].anzsrc:field:310204 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310204 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].anzsrc:field:310208 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310208 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Translational and applied bioinformatics'] |
| concepts[field].anzsrc:field:310701 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Bacteriology'] |
| concepts[field].anzsrc:field:310701 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Bacteriology'] |
| concepts[field].anzsrc:field:310701 | mapping · datahub hku hk | vocabulary-mapper@1.0.0 | keywords['Bacteriology'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · datahub hku hk | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/description |
| license | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/rights |
| publication_date | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | |
| title | source · datahub hku hk | connector:datahub_hku_hk@1.0.0 | /metadata/dc/title |