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Table · dataset · 2026

Public FDA MRSP-detection boundary benchmark derived package

Listed in HKU DataHub and figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.32569260.v7

Description

<p dir="ltr">Derived data and code supporting the Microbial Genomics manuscript MGEN-D-26-00487 (de Souza and Santoro).</p><p dir="ltr"><br></p><p dir="ltr">The current resubmission archive is MGEN_REPRODUCIBILITY_PACKAGE_20260927.zip (373,741,668 bytes; SHA-256: 0c9cf36312858a5e05a91c65fdad9f5ffa3ad91f2e03097ac35a4c34c47b31bf). It contains 594 files, including the September 2026 corrected training-only restricted-shell analysis, training-only pangenome dictionary, model input matrices, fitted models, frozen predictions, outcome extract, evaluation results, analysis code, provenance receipts, software records, a computational protocol and the current four main-figure PDFs.</p><p dir="ltr"><br></p><p dir="ltr">Start with README.md, COMPUTATIONAL_PROTOCOL.md, DISTRIBUTION_NOTE.md and POSTREVIEW_CLARIFICATIONS_20260927.md.

The historical June materials and July repeated-split addendum are included within this comprehensive archive and are labelled separately from the corrected training-only analysis.</p><p dir="ltr"><br></p><p dir="ltr">This version clarifies that the Table S11 tie-resampling intervals combine group-resampling and tie-order variability and are descriptive, adds the supplementary-number crosswalk, and adds the current four main-figure PDFs.

Read the rest (3 more)

Figure 1 now labels the 2,279 genomes as candidate assemblies. Previously deposited scientific data, fitted models, frozen predictions, numerical results, executable scripts and frozen execution notes are unchanged from version 6. Current distribution checksums are provided in PAYLOAD_MANIFEST.json and SHA256SUMS.txt.

Historical execution receipts retain their original run hashes; the distribution note explains documentation changes.</p><p dir="ltr"><br></p><p dir="ltr">The deposit supports checks from the deposited matrices and frozen predictions. Source genomes and the FDA workbook are not redistributed, raw per-assembly projection directories are not included, and HiPerGator-specific paths and execution bindings require adaptation.

The computational protocol documents these reproducibility limits.</p>

Links

Where it is published

Catalogue records · 1

Topics

Inferred from text
Tabular 65%
Provenance · 3 source records, 43 field assertions
SourceKeyLast seenRaw
HKU DataHuboai:figshare.com:article/325692607 d agoJSON v1
figshareoai:figshare.com:article/325692607 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/325692607 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · datahub hku hkconnector:datahub_hku_hk@1.0.0
concepts[field].anzsrc:field:300903mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Veterinary bacteriology']
concepts[field].anzsrc:field:300903mapping · figshare comvocabulary-mapper@1.0.0keywords['Veterinary bacteriology']
concepts[field].anzsrc:field:300903mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Veterinary bacteriology']
concepts[field].anzsrc:field:310204mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310204mapping · figshare comvocabulary-mapper@1.0.0keywords['Genomics and transcriptomics']
concepts[field].anzsrc:field:310208mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
concepts[field].anzsrc:field:310208mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
concepts[field].anzsrc:field:310208mapping · figshare comvocabulary-mapper@1.0.0keywords['Translational and applied bioinformatics']
concepts[field].anzsrc:field:310701mapping · figshare comvocabulary-mapper@1.0.0keywords['Bacteriology']
concepts[field].anzsrc:field:310701mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Bacteriology']
concepts[field].anzsrc:field:310701mapping · datahub hku hkvocabulary-mapper@1.0.0keywords['Bacteriology']
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concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
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concepts[field].local:field:earth-environmentalmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:earth-environmentalmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:economics-financemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:economics-financemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:ocean-atmosphericmapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:psychology-behavioralmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:social-sciencemapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
concepts[modality].local:modality:tabularenrichment · datahub hku hkkeyword-concept-rules@1.0.0title+description (65%)
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