Omics · study · 2026
RNA-seq analysis for the Fluo-4 abnormal myofibers in aged mice
Listed in NCBI GEO
In a rapidly aging society, the age-related decline in muscle mass and force, sarcopenia, is an urgent medical and economic issue.
Description
However, the molecular mechanisms of sarcopenia are still largely unknown. Using Ca2+ indicator Fluo-4, we identified the presence of the Fluo-4 abnormal muscle fibers only in aged mice.
The Fluo-4 abnormal muscle fibers had a tubular aggregate-like structure and morphologically abnormal mitochondria. Furthermore, a cluster of mitochondria-related genes, including mitochondrially-encoded genes, were downregulated in Ca2+-abnormal muscle fibers. These results indicate that the Fluo-4 abnormal muscle fibers are accumulated in aged mice, and that age-related mitochondrial abnormalities are more prominent in these fibers.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE300nnn/GSE300563 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300563 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1281385 ncbi.nlm.nih.gov/bioproject/PRJNA1281385 ↗
project · from NCBI GEO
- PubMed 42696581 pubmed.ncbi.nlm.nih.gov/42696581 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE300563 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |