Data · dataset · 2026
Gene expression and functional enrichment data from RNA-seq and public databases on autophagy and ABA responses during Arabidopsis thaliana seed germination
Listed in e-cienciaDatos
This dataset contains the supplementary data associated with the article “Autophagy-related genes AtATG5 and AtATG7 influence reserve mobilization and ABA responses during Arabidopsis seed germination”, published in the Journal of Experimental Botany.
Description
It includes: (i) a list of genes identified using the autophagy Gene Ontology term in AmiGO and their expression profiles in siliques and seeds obtained from the Bio-Analytic Resource for Plant Biology (BAR); (ii) DESeq2 differential expression results for atg7 versus Col-0 imbibed seeds at t0; (iii) Gene Set Enrichment Analysis (GSEA) results for the same comparison; (iv) DESeq2 differential expression results for atg7 versus Col-0 seeds at t50 in response to 1 µM ABA, including genes specifically responding to ABA in the atg7 mutant compared with Col-0; and (v) Gene Ontology and transcription factor analyses of the ABA response in atg7 versus Col-0 during seed germination.
Links
Where it is published
- Dataverse dataset page edatos.consorciomadrono.es/dataset.xhtml?persistentId=doi%3A10.21950%2FFF3GXQ ↗
landing page · from edatos consorciomadrono es
- DOI doi.org/10.21950/ff3gxq ↗
DOI / persistent id · from edatos consorciomadrono es
Catalogue records · 1
- Dataverse API edatos.consorciomadrono.es/api/datasets/:persistentId/?persistentId=doi%3A10.21950%2FFF3G… ↗
metadata API · from edatos consorciomadrono es
Topics
- Stated by source
- Ciencias agrarias · Ciencias médicas, de la salud y de la vida
- From keywords
- Medicine & Health
- Inferred from text
- Oncology and carcinogenesis 68% · RNA sequencing 65%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| e-cienciaDatos | doi:10.21950/FF3GXQ | 6 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| concepts[field].anzsrc:group:3211 | enrichment · edatos consorciomadrono es | taxonomy-embedding@1.1.0 | title+keywords+description (68%) |
| concepts[field].dataverse_subject:ciencias-agrarias | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[field].dataverse_subject:ciencias-m-dicas-de-la-salud-y-de-la-vida | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[field].local:field:medicine-health | mapping · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /subjects |
| concepts[modality].local:modality:rna-seq | enrichment · edatos consorciomadrono es | keyword-concept-rules@1.0.0 | title+description (65%) |
| created_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| description | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /description |
| publication_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| title | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | /name |
| updated_date | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 | |
| version_label | source · edatos consorciomadrono es | connector:edatos_consorciomadrono_es@1.0.0 |