Omics · study · 2026
PARN-Driven Alternative Polyadenylation Regulates Immunoglobulin Homeostasis in Antibody-Secreting Cells
Listed in NCBI GEO
Class switch recombination (CSR) is a programmed DNA recombination process that enables B cells to switch the isotype of antibodies they produce, thereby generating high-affinity immunoglobulins essential for adaptive immunity.
Description
Notably, systemic lupus erythematosus (SLE) frequently arises in the context of hypersensitivity; however, the precise mechanisms underlying its pathogenesis remain incompletely understood. Here, we demonstrate that poly(A)-specific ribonuclease (PARN), an RNA-binding protein, acts as a critical regulator of CSR.
In antibody-secreting cells, loss of PARN impairs CSR, resulting in a reduced proportion of cells producing post-switched immunoglobulin isotypes. Mechanistically, PARN specifically binds to the enhancer motif UGUA and the polyadenylation signal AAUAAA. PARN subsequently promotes transcript 3’ UTR shortening through alternative polyadenylation to regulate RNA stability.
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Depletion of PARN contributes to widespread 3’ UTR lengthening across the transcriptome, notably affecting the Foxp1 transcript, and consequently impedes CSR efficiency. We further identified PTBP1 and PABP as cofactors that functionally cooperate with PARN to suppress CSR. Analysis of human datasets further reveals that Parn expression is elevated in patients with SLE.
In an SLE mouse model, targeted Parn knockout in B lymphocytes undergoing CSR alleviates disease severity. This study unveils PARN as a key modulator of CSR in B cells, highlighting its therapeutic potential in SLE.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE312nnn/GSE312680 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE312680 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1375703 ncbi.nlm.nih.gov/bioproject/PRJNA1375703 ↗
project · from NCBI GEO
- PubMed 42118147 pubmed.ncbi.nlm.nih.gov/42118147 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE312680 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |