Omics · study · 2026
Overlapping roles of Irx3 and Irx4 in the compaction of the ventricular myocardium
Listed in NCBI GEO
To determine Irx3 and Irx4 regulatory pathways during heart compaction, RNA-seq analyses on WT, Irx3KO, Irx4KO, and Irx3;Irx4DKO mutants hearts were performed to determine misregulated pathways upon the loss of these transcription factors.
Description
Our analyses revealed that there are overlapping functions between Irx3 and Irx4, and that both Irx3 and Irx4 are required for the regulation of the BMP/TGFβ signalling pathway known to be involved in endocardial cushion formation.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114872 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114872 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA472955 ncbi.nlm.nih.gov/bioproject/PRJNA472955 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Heart 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE114872 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |