Table · dataset · 2026
DEG Annotation file of both the varieties
Listed in figshare
<p dir="ltr">Differentially expressed transcripts identified in the susceptible okra cultivar Pusa Sawani post Bhendi Yellow Vein Mosaic Virus (BYVMV) infection.
Description
The table contains the significantly differentially expressed transcripts, their statistics of expression and functional annotation. transcript_id is the assembled transcript identifier. logFC is the log2 fold change in expression between BYVMV-infected and control samples, with positive values indicating up-regulation and negative values indicating down-regulation in infected plants.
FDR False Discovery Rate, the Benjamini–Hochberg adjusted p-value for determining statistical significance.</p><p dir="ltr">For functional annotation, KJB_id is the gene model identifier from the KJB okra reference genome annotation and B456_id is the corresponding gene identifier from the Bhendi-456 genome assembly. tair_locus indicates the best matching Arabidopsis thaliana locus found by sequence homology searches and used as reference for functional inference. bitscore is the BLAST alignment score of the best hit.
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Higher scores mean higher sequence similarity description is the predicted functional annotation of the transcript based on its closest homolog in public databases.
- "NA" indicates that no reliable homologous sequence, functional annotation, or database match was obtained for the respective transcript. Only FDR < 0.05 transcripts are displayed.</p>
Links
Where it is published
- DOI doi.org/10.6084/m9.figshare.33941587.v1 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
- Astronomy & Astrophysics · Chemistry · Computer Science & AI · Earth & Environmental Science · Economics & Finance · Engineering · Genomics and transcriptomics · Humanities · Life Sciences · Medicine & Health · Ocean & Atmospheric Science · Social Science
- Inferred from text
- Tabular 65%
Provenance · 1 source records, 18 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/33941587 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:310204 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics and transcriptomics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · figshare com | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |