Excel · study · 2026
Effects of trans, trans-2,4-decadienal on gene expression in ARPE-19 cells
Listed in NCBI GEO
trans, trans-2,4-decadienal (tt-DDE) is a toxic compound generated during frying processes.
Description
Emerging evidence suggests its potential role in inducing age-related macular degeneration (AMD), a leading cause of vision loss in older adults. To investigate the underlying mechanisms, we performed transcriptome sequencing on ARPE-19 cells following a 24-hour treatment with tt-2,4-DDE.
The results revealed significant alterations in the expression of genes involved in pathways regulating endomembrane system homeostasis, including those associated with the endoplasmic reticulum, Golgi apparatus, and lysosomes. These findings indicate that tt-2,4-DDE may disrupt endomembrane system function in retinal pigment epithelial cells, providing novel insights into the molecular basis by which environmental toxicants like tt-2,4-DDE could contribute to AMD pathogenesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304866 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304866 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1303095 ncbi.nlm.nih.gov/bioproject/PRJNA1303095 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304866 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |