Omics · study · 2026
Post Kala Azar Dermal Leishmaniasis (PKDL) genome wide transcriptional profiling by bulk RNA-sequencing
Listed in NCBI GEO
Post-kala-azar dermal leishmaniasis (PKDL), a dermal sequel of visceral leishmaniasis (VL), is considered an important reservoir that facilitates the transmission of VL.
Description
Although PKDL lesions demonstrate an overwhelming infiltration of CD8⁺ T cells, the molecular mechanisms regulating their recruitment to the skin remain poorly defined. To address this, bulk RNA sequencing was performed on dermal lesions from patients withPKDL and healthy controls to characterize the lesional chemokine and cytokine landscape associated with T-cell homing.Transcriptomic analysis revealed a significant upregulation of genes encoding T-cell chemoattractants, including CCL3, CCL4, CCL5, CCL17, CXCL9, and CXCL10, in PKDL lesions compared to healthy skin.
In addition, sequencing data demonstrated increased expression of inflammatory cytokine transcripts such as IFN-γ, IL-5, IL-15, and TNF-α, indicating an activated inflammatory milieu. The transcriptomic profile further showed elevated expression of genes associated with chemokine receptor pathways, particularly CCR4, CCR5, and CXCR3, suggesting enhanced signaling pathways that promote CD8+ T cell migration from circulation and retention within lesional skin.
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Collectively, the RNA sequencing data highlights a chemokine-driven CD8+T cell recruitment and contributes to characterise the molecular markers related to the homing of lesional CD8+ T cells.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324689 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324689 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1436570 ncbi.nlm.nih.gov/bioproject/PRJNA1436570 ↗
project · from NCBI GEO
- PubMed 42497210 pubmed.ncbi.nlm.nih.gov/42497210 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324689 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |