Omics · study · 2026
Circular RNA expression profiling of mouse MOVAS cells upon benzo[a]pyrene (BaP) exposure
Listed in NCBI GEO
Circular RNA microarray was performed to profile the circular RNA transcriptome of mouse MOVAS cells with or without benzo[a]pyrene (BaP) treatment.
Description
MOVAS cells were exposed to 10 μM BaP for 72 hours, and untreated MOVAS cells were used as control, with three biological replicates for each group (6 samples in total). Total RNA extracted from all samples was digested with RNase R to eliminate linear RNAs and enrich circular RNAs, followed by amplification and Cy3 fluorescent labeling using Arraystar Super RNA Labeling Kit.
Labeled cRNAs were hybridized onto Arraystar Mouse circRNA Array V2 microarrays. Slides were scanned with Agilent Scanner G2505C, and raw intensity data were extracted via Agilent Feature Extraction software v11.0.1.1. Quantile normalization was conducted using the limma package in R. This submission contains raw and normalized microarray expression data only.
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The data provides a complete circRNA expression baseline for subsequent exploration of molecular mechanisms underlying BaP-induced vascular cell injury.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337058 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337058 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1483981 ncbi.nlm.nih.gov/bioproject/PRJNA1483981 ↗
project · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Non-coding RNA profiling by array
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337058 | 8 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:non-coding-rna-profiling-by-array | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |