PlasmidCall: code and frozen models for plasmid-origin classification of short-read contigs

<p dir="ltr">Code and frozen models of PlasmidCall, which classifies short-read assembly contigs as plasmid- or chromosome-derived from the calls of twelve published plasmid classifiers. This item archives release v1.1.0 of github.com/piranfar/PlasmidCall (git tag v1.1.0, commit 19e840546799a9d404fdf77c0a099df206efab2f) as one zip file.</p><p dir="ltr">The release contains the frozen PlasmidCall v1.2-General model (a logistic regression on the twelve classifiers' categorical calls, provided as a portable JSON file that needs only numpy and as a scikit-learn pickle) and PlasmidCall v1.1 (histogram gradient boosting, a scikit-learn 1.9.0 pickle), with their SHA-256 digests; the frozen panel-output parser; a standalone scorer; tests showing that the scorer reproduces the frozen outputs of the 150-isolate evaluation exactly (the default run checks a 200-row fixture; the full 19,320-contig check runs when given the P1.13 table from the data deposit); and the design records, evidence receipts and derived tables of that evaluation.</p><p dir="ltr">The bulk data of the evaluation (parsed classifier calls, assemblies, execution receipts and the joined truth table) are in a separate data deposit, doi:10.5281/zenodo.22086357 (version 1.0.0; the concept DOI 10.5281/zenodo.22086356 resolves to the latest version).

That deposit holds no model files; its Part 1 holds as-executed copies of the P1.13 run scripts, including the frozen parser, under CC BY 4.0. No third-party program or database is redistributed.</p><p dir="ltr">Licences: every .py, .sh and .diff file and the model files under models/ other than Markdown are under MIT (LICENSE); everything else, including documentation, tables, fixtures and metadata, is under CC BY 4.0 (LICENSE-DATA).