42 datasets

figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">These files provide the raw datasets of "A convergent proline biosynthetic step couples cell wall integrity to virulence in <i>Cryptococcus neoformans</i><i>.</i>"</p>

ZivaHub + Deakin Research Online + DMU Figshare2026 · dataset · unknown

<p><strong>The escalating global crisis of antimicrobial resistance (AMR) poses a severe threat to human health, creating an urgent need to discover novel antimicrobial compounds. Natural products derived from actinobacteria represent a rich and diverse repertoire of bioactive molecules. However, biosynthetic gene clusters (BGCs) encoding these compounds ae often poorly expressed under standard la

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData2026 · dataset

<p dir="ltr">These files provide the raw datasets of "A convergent proline biosynthetic step couples cell wall integrity to virulence in <i>Cryptococcus neoformans</i><i>.</i>"</p>

ZivaHub + Deakin Research Online + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Properties of ST49 genomes</p>

ZivaHub + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">16s data from a study looking at how bacteroides acidifaciens alters reponses to SEB-induced acute respiratory distress syndrome in a sex-dependent manner.</p>

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This repository contains the source data and R analysis code supporting the curated quantitative evidence synthesis presented in “The Plant Detoxosphere: Molecular Mechanisms and Global Dynamics of Cross-Kingdom Detoxification at the Plant–Microbe–Pollutant Interface.” The deposited materials include source-attributed rhizosphere–bulk-soil gene-abundance contrasts, per-gene estimates,

ZivaHub + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Nonredundant species-level catalogue of 9,025 MAG representatives. </p>

ZivaHub + HKU DataHub + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr"><i>Megasphaera elsdenii</i> is a lactate-consuming bacterium found in the rumen and human gut. In this study, we compared 86 <i>M. elsdenii</i> genomes from human feces with animal gut isolates. Phylogenetic analysis revealed a single, genetically homogeneous lineage without host-specific clustering. Human isolates shared most genes and metabolic pathways with swine and cattle isolate

ZivaHub2026 · dataset

<p dir="ltr">Scarlet fever is a clinical presentation associated with Streptococcus pyogenes pharyngitis. Despite its scarcity at the start of the century, large outbreaks have been ongoing in mainland China and Hong Kong since 2011 and in the United Kingdom since 2014. However, scarlet fever remains relatively undescribed in other settings where it is not a notifiable disease. This study describe

ZivaHub2026 · dataset · unknown

<p><strong>Phytophthora agathidicida is an oomycete plant pathogen found throughout northern Aotearoa | New Zealand forests that infects the root tissue of kauri trees, causing decay and limiting water and nutrient uptake, leading to tree death. P. agathidicida is a particularly successful pathogen due to its multifaceted lifecycle, where each stage either contributes to the pathogen’s resilience

ZivaHub2026 · dataset

<p dir="ltr">Code and frozen models of PlasmidCall, which classifies short-read assembly contigs as plasmid- or chromosome-derived from the calls of twelve published plasmid classifiers. This item archives release v1.1.0 of https://github.com/piranfar/PlasmidCall (git tag v1.1.0, commit 19e840546799a9d404fdf77c0a099df206efab2f) as one zip file.</p><p dir="ltr">The release contains the frozen Plasm

HKU DataHub + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr"><b>Background</b>: Optimising sampling frames for genomic surveillance of <i>E. coli</i> and <i>Klebsiella </i>may support interventions to mitigate bloodstream infections (BSIs), but approaches to estimating sample size and how these relate to bacterial population diversity at multiple genetic levels (strain/plasmid/antimicrobial resistance genes</p><p dir="ltr">[ARGs]) are lacking.<

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">l Dietary supplementation with B.subtilis PGM357 significantly ameliorates growth retardation and restores intestinal barrier function in growth-retarded piglets.</p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">This deposit contains the sequence, phylogenetic, and mercury data underlying the figures and statistics reported in Zhang et al., "A conserved AbrB-family regulator represses hgcAB transcription and mercury methylation in Archaea."</p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p>The prevalent life-threatening microbial and cancer diseases and lack of effective pharmaceutical therapies created the need for new molecules with antimicrobial and anticancer potential. Bee venom (BV) was collected from honeybee workers, and melittin (NM) was extracted from BV and analyzed by urea-polyacrylamide gel electrophoresis (urea-PAGE). The isolated melittin was hydrolyzed with alcala

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Five genome-related files from the study, covering resequencing, assembly, and annotation.</p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">The study was conducted during the NORC2024-01 spring cruise (April 12-29, 2024) aboard the R/V Lanhai 101. A total of 24 sampling stations were established across the three transects (Bohai Sea, North Yellow Sea and South Yellow Sea), covering 32.97-39.58 N and 119.01-123.98 E (in decimal degrees). At each station, surface (approximately 3 m) and near-bottom (17-78 m) seawater was co

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">This repository accompanies the systematic review “Pyomelanin in <i>Pseudomonas aeruginosa</i>: a systematic review of genetic architectures, evolutionary trade-offs and clinical relevance”. It contains study-level data extracted from 50 included studies, mapped-deletion data and the Supplementary Information.</p>

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the genera Escherichia (NCBI taxon 561) and Shigella (taxon 620) for species-level identification with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- escherichia_shigella_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 10000, 4503 reference genomes: Escherichia coli (3316), E. albertii, E. fergusonii, E. m

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the genus Brucella (NCBI taxon 234), including the species formerly classified as Ochrobactrum, for species-level identification with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- brucella_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 10000, 387 reference genomes covering 29 Brucella species (31 MB). MD

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">pGGTOX is a modular plasmid system enabling efficient, marker‑free genome editing across multiple Enterobacteriaceae species. It combines rhamnose‑inducible toxin counterselection, sfGFP reporting, Golden Gate cloning, and conjugative transfer to support precise chromosomal and plasmid modifications. Using pGGTOX, we generated targeted deletions (dapA, mrkCD, and a 43‑kb tra cluster)

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the proGenomes 4 representative genomes (https://progenomes.embl.de) for species-level identification of bacteria and archaea with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- progenomes4_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 2000, 32,887 representative genomes, one per proGenomes species clust

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the genus Salmonella (NCBI taxon 590) for species- and subspecies-level identification with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- salmonella_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 10000, 1442 reference genomes covering Salmonella bongori and all six subspecies of Salmonella enterica (116

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the family Mycobacteriaceae (NCBI taxon 1762) for species identification with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- mycobacteriaceae_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 10000, 3534 reference genomes (284 MB). MD5: cc73df8b8b5f7257849c6039430f2a43</p><p dir="ltr">- mycobacteriaceae_2026

figshare + Loughborough Research Repository2026 · Genome sequencing

<p dir="ltr">Mash sketch database of the genus Listeria (NCBI taxon 1637) for species identification with mashID (https://github.com/duceppemo/mashID).</p><p dir="ltr">Contents</p><p dir="ltr">- listeria_2026-09-22.msh: Mash 2.3 sketches, k-mer size 21, sketch size 10000, 1441 reference genomes covering 42 Listeria species and subspecies (116 MB). MD5: 4d0f8f53d71dbcea526508f1b246ab2f</p><p dir="l