Omics · study · 2026
TM9SF2 Reprograms Antigen Presenting Neutrophils to Overcome Immune Evasion in NSCLC [Bulk RNA-seq]
Listed in NCBI GEO
Immune evasion drives resistance to immunotherapy in non-small cell lung cancer (NSCLC), but the underlying mechanisms remain incompletely understood.
Description
Through a surfaceome-focused CRISPR screen, we identified Tm9sf2 as a critical regulator of immune evasion in NSCLC. We demonstrate that Tm9sf2 sustains an MHC I/II-mediated antigen-presenting Il15rahigh neutrophil subset, which is essential for T cell infiltration and activation.
Mechanistically, Tm9sf2 deficiency disrupts nuclear translocation of the NuRD transcriptional repressor complex, leading to derepression of Col6a1 and its pathological hypersecretion into the tumor microenvironment. Subsequently, Col6a1 binds to the surface receptor Tlr4 on neutrophils, activating the Stat3-Socs1 axis to suppress interferon signaling and impair antigen presentation, thereby abrogating neutrophil- and T cell-mediated anti-tumor immunity.
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Therapeutically, amitriptyline restores Tm9sf2 expression while inhibiting Col6a1 production, thereby expanding the antigen-presenting Il15rahigh neutrophil subset to reignite anti-tumor T cell responses. These findings delineate a previously unrecognized immune evasion axis in NSCLC and identify a potential strategy to reverse immunotherapy resistance.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE304nnn/GSE304904 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE304904 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1303213 ncbi.nlm.nih.gov/bioproject/PRJNA1303213 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE304904 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |