Omics · study · 2026
Transcriptomic and chromatin accessibility profiling of liver from Midn XTR conditional knockout mice
Listed in NCBI GEO
This study investigates the role of Midnolin (Midn) in regulating hepatic transcriptional and chromatin landscapes in vivo.
Description
Midn is a ubiquitin-like domain–containing nuclear protein that mediates ubiquitin-independent proteasomal degradation of transcription factors. Although Midn has been implicated in metabolic regulation and liver disease, its physiological function in normal liver remains poorly understood.
To address this, we generated a liver-specific Midn conditional depletion mouse model using an eXpressed–Trapped–Restored (XTR) gene-trap strategy. In this system, Cre recombination converts the XTR allele into a Trapped (Midn-T) state, resulting in disruption of Midn expression and activation of a GFP reporter. Liver tissues from wild-type (WT) and Midn-T mice of both sexes were collected for genomic analysis.
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Transcriptomic profiling was performed using RNA sequencing (RNA-seq), and chromatin accessibility was assessed using ATAC sequencing (ATAC-seq). Differential gene expression and chromatin accessibility analyses were conducted to identify Midn-dependent regulatory changes in liver tissue. These data provide insight into the role of Midn in hepatic gene regulation and chromatin organization and reveal sex-dependent effects on metabolic gene expression programs.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326870 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326870 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1447507 ncbi.nlm.nih.gov/bioproject/PRJNA1447507 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Disease 75% · Genetics 69% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326870 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:disease | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (69%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |