← Search

Omics · study · 2026

Transcriptomic and chromatin accessibility profiling of liver from Midn XTR conditional knockout mice

Listed in NCBI GEO

This study investigates the role of Midnolin (Midn) in regulating hepatic transcriptional and chromatin landscapes in vivo.

Description

Midn is a ubiquitin-like domain–containing nuclear protein that mediates ubiquitin-independent proteasomal degradation of transcription factors. Although Midn has been implicated in metabolic regulation and liver disease, its physiological function in normal liver remains poorly understood.

To address this, we generated a liver-specific Midn conditional depletion mouse model using an eXpressed–Trapped–Restored (XTR) gene-trap strategy. In this system, Cre recombination converts the XTR allele into a Trapped (Midn-T) state, resulting in disruption of Midn expression and activation of a GFP reporter. Liver tissues from wild-type (WT) and Midn-T mice of both sexes were collected for genomic analysis.

Read the rest (1 more)

Transcriptomic profiling was performed using RNA sequencing (RNA-seq), and chromatin accessibility was assessed using ATAC sequencing (ATAC-seq). Differential gene expression and chromatin accessibility analyses were conducted to identify Midn-dependent regulatory changes in liver tissue. These data provide insight into the role of Midn in hepatic gene regulation and chromatin organization and reveal sex-dependent effects on metabolic gene expression programs.

Links

Where it is published

Documentation and papers

Topics

From keywords
Life Sciences
Inferred from text
Disease 75% · Genetics 69% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 12 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE32687014 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[disease].local:disease:diseaseenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].anzsrc:group:3105enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (69%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[modality].local:modality:rna-seqenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[modality].local:modality:sequencingenrichment · NCBI GEOkeyword-concept-rules@1.0.0title+description (75%)
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title