Data · dataset · 2023
TwinNetworkDataset032
Listed in RADAR and RADAR4Memory — shown once because both records carry DOI 10.48606/90
The data comprises bright-field time-lapse images of zebrafish embryos acquired in multiple batches within multi-well plates using an Acquifer Imaging Machine.
Description
Embryos from incrosses of Tg(sebox:EGFP) and incrosses of TE zebrafish strains were used for imaging. Small-molecule signaling pathway modulator LDN-193189 was added to well A2 with a final concentration of 3.5 µM and to well A3 with a final concentration of 4 µM. Small-molecule signaling pathway modulator SB-505124 was added to wells B1-B3 with final concentrations of 4 µM in well B1, 5 µM in well B2, and 6 µM in well B3.
Well A1 did not receive small-molecule signaling pathway modulator treatment. Imaging started with embryos between 2-3 hpf and ended with embryos between 27-28 hpf. Images of embryos were acquired at 180 acquisition time points with a time interval of 501 s between each acquisition time point.
Read the rest (1 more)
Individual embryo segments were identified and extracted using a trained neural network for object detection. Within this experiment folder, data are organized by microscope position and embryo number.
Links
Where it is published
- DOI doi.org/10.48606/90 ↗
DOI / persistent id · from radar service eu de
Catalogue records · 1
- OAI-PMH record radar-service.eu/oai/OAIHandler?verb=GetRecord&metadataPrefix=oai_dc&identifier… ↗
metadata API · from radar service eu de
Topics
- From keywords
- Bioinformatics and computational biology · Bioinformatics and computational biology · Computer Science & AI · Computer Science & AI · Danio rerio · Danio rerio · Deep learning · Deep learning · Earth & Environmental Science · Earth & Environmental Science · Life Sciences · Life Sciences
Provenance · 2 source records, 19 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| RADAR | 10.48606/90 | 10 d ago | JSON v1 |
| RADAR4Memory | 10.48606/90 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].anzsrc:field:461103 | mapping · radar4memory radar service eu | vocabulary-mapper@1.0.0 | keywords['deep learning'] |
| concepts[field].anzsrc:field:461103 | mapping · radar service eu de | vocabulary-mapper@1.0.0 | keywords['deep learning'] |
| concepts[field].anzsrc:group:3102 | mapping · radar4memory radar service eu | vocabulary-mapper@1.0.0 | keywords['computational biology'] |
| concepts[field].anzsrc:group:3102 | mapping · radar service eu de | vocabulary-mapper@1.0.0 | keywords['computational biology'] |
| concepts[field].local:field:computer-science-ai | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · radar4memory radar service eu | connector:radar4memory_radar_service_eu@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · radar service eu de | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:imaging | enrichment · radar service eu de | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:7955 | mapping · radar4memory radar service eu | vocabulary-mapper@1.0.0 | keywords['zebrafish'] |
| concepts[organism].NCBITaxon:7955 | mapping · radar service eu de | vocabulary-mapper@1.0.0 | keywords['zebrafish'] |
| description | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/description |
| license | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/rights |
| publication_date | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | |
| title | source · radar service eu de | connector:radar_service_eu_de@1.0.0 | /metadata/dc/title |