Omics · study · 2026
Organ-specific regulatory logic orchestrates gene expression in the coelomic mesothelium
Listed in NCBI GEO
The embryonic (coelomic) mesothelium undergoes epithelial-to-mesenchymal transition (EMT) to promote vascular growth and parenchymal development.
Description
A prominent example is the epicardium, which plays an essential role during heart development. Little is known about the mechanisms behind gene regulation in the coelomic mesothelium, and organ-specific enhancer logic that endows specialization.
Using gene regulatory network inference via single-cell multi-omics, our study reveals trans- and cis-regulatory elements (CREs) that regulate mesothelial gene expression in three organs: heart, lung, and pancreas. Here, we expand on pivotal transcription factors (TFs) and CREs specific to the epicardium. In contrast, we find that the TF MAF may orchestrate pan-mesothelial gene expression via conserved CREs, which are absent from non-mesothelial lineages.
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MAF may preserve mesothelial identity, evidenced by negative correlation with EMT and conservation in mouse and human epicardial cells. Collectively, our work sheds light on the regulatory logic behind cell type identity and leverages single-cell integration to gain insights into mammalian organ development.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE300nnn/GSE300631 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE300631 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1281591 ncbi.nlm.nih.gov/bioproject/PRJNA1281591 ↗
project · from NCBI GEO
- PubMed 41933934 pubmed.ncbi.nlm.nih.gov/41933934 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Heart 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE300631 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[anatomy].local:anatomy:heart | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |