Data · dataset · 2021
Human T cell scRNAseq
Listed in Researchdata.se
This dataset contains genomic TCR beta sequences from single cell DNA samples amplified by multiple displacement amplification (MDA) and subjected to nested PCR targeting the genomic TCR beta locus.
Description
The individual files contain raw data representing nucleotide sequences including both productive and non-productive rearrangements of the TCR beta sequence (with dropout in some cases). FASTQ files corresponding to single cell RNAseq data from single CD8+ T cells prepared by the smart-seq2 method.
FASTQ files for 25-cell ‘mini-bulk’ RNAseq for CD8+ T cells prepared according to the smart-seq2 protocol.
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.14376104 ↗
DOI / persistent id · from researchdata se
Catalogue records · 1
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Medical biotechnology · Medicine & Health
- Inferred from text
- RNA sequencing 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:doi-10-17044-scilifelab-14376104/0 | 11 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license_text | source · researchdata se | connector:researchdata_se@1.0.0 | |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |