Omics · study · 2026
Early macrophage immune responses and pathogenic features of an emerging Mycobacterium wolinskyi
Listed in NCBI GEO
Mycobacterium wolinskyi is an emerging rapidly growing mycobacterial species whose pathogenic mechanisms and host response patterns remain poorly understood.
Description
In this study, a clinical M. wolinskyi strain, designated QL01, was isolated from an 11-year-old child with a facial skin infection. Whole-genome sequencing revealed multiple features associated with pathogenicity, antimicrobial resistance, and host adaptation, including antimicrobial resistance genes, putative virulence factors, genomic islands, prophages, type VII secretion systems, and mammalian cell entry operons.
To investigate the early host response, mouse bone marrow-derived macrophages were infected with M. wolinskyi QL01 and subjected to RNA sequencing. Transcriptomic analysis showed broad induction of inflammatory and immunometabolic programs, with prominent enrichment of the TNF, NF-kappa B, and HIF-1 signaling pathways. These findings provide a genomic and transcriptomic framework for understanding host-pathogen interactions involving M. wolinskyi.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE327nnn/GSE327535 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327535 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1451178 ncbi.nlm.nih.gov/bioproject/PRJNA1451178 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Genome sequencing 65% · RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE327535 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:genome-sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |