Data · dataset · 2025
Supplementary Table 10: Ancestral sequence reconstruction for the HAO phylogeny corresponding to the study "Origin and evolution of key enzymes in the anammox pathway revisited".
Listed in Researchdata.se
Output table of the ancestral sequence reconstruction for the hydroxylamine oxidoreductase (HAO) phylogeny.
Description
This analysis was computed using IQ-Tree v2.2.0 and HAO alignment and phylogenetic tree as input.The table contains the following columns:- Node: Node name in the phylogenetic tree.- Site: Position number of the predicted sequence at the specific Node.- State: Most likely state (amino acid) assigned by the test. Uncertain states are represented by "-".- p_X: Posterior probability for state X (empirical Bayesian method) estimated by the test.
There is one column per amino acid.
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.30084382 ↗
DOI / persistent id · from researchdata se
Catalogue records · 1
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
Topics
- From keywords
- Earth & Environmental Science · Life Sciences · Medicine & Health
- Inferred from text
- Phylogeny and comparative analysis 75% · Tabular 65%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:doi-10-17044-scilifelab-30084382/0 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].anzsrc:field:310410 | enrichment · researchdata se | taxonomy-embedding@1.1.0 | title+keywords+description (75%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |