90 datasets

NCL Data2026 · dataset

<p dir="ltr">Our study reconstructs the evolutionary history of the histaminergic signaling system across 89 proteomes spanning major metazoan lineages to determine how its molecular components emerged and diversified. Using homology searches and inferences, domain validation, phylogenetic reconstruction, rogue taxon filtering, and gene tree–species tree reconciliation, we analyzed core gene famil

GRANTS Data + UP Research Data Repository2026 · dataset

<p dir="ltr">Bird song complexity has attracted scientific interest for centuries, mainly because song complexity is a sexually selected signal, and its divergence will produce reproductive isolation and speciation. Yet comparative tests have been hindered by inconsistent definitions of song complexity. We tested the former hypothesis that lineages exploring the song phenotypic space more broadly

Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Crystal structure

<p dir="ltr">Oomycete plant pathogens threaten global food security, agriculture, and environmental health. Molecular identification of oomycetes typically relies on short high-copy number DNA markers (~500-bp or less), such as ribosomal DNA or mitochondrial cytochrome oxidase subunits, but these markers may lack species- or subspecies-level resolution due to factors like insufficient nucleotide v

ZivaHub + Deakin Research Online + DMU Figshare + UCL Research Data Repository2026 · dataset

This thesis’ core aim is to understand the role that intra-party factionalism has in two major social democratic parties – the Labour Party and the SPD, respectively – on the parties’ responses to electoral decline. To so do, a review of the changing social, political, economic and electoral environment wherein the parties exist is considered. However, the combination of these such challenges alon

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<h4 dir="ltr">This repository hosts the structural and functional genome annotations, non-redundant predicted coding sequences, translated proteomes, and non-coding RNA annotations supporting the chromosome-level reference genome assemblies of two red algae: <i>Porphyra dioica</i> (BioProject PRJEB104629) and <i>Porphyra linearis</i> (BioProject PRJEB104630) (Bangiales).</h4><h4 dir="ltr">This dat

ZivaHub + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This directory holds sequence alignments and summaries of alignment, locus, and taxon coverage.</p>

ZivaHub + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This directory holds phylogenetic trees and related tree files used for species-level, genus-level, dating, and title analyses.</p>

ZivaHub + Deakin Research Online + DMU Figshare + HKU DataHub + Swinburne Figshare + DaYta Ya Rona + SUNScholarData + figshare + Loughborough Research Repository + GRANTS Data + UP Research Data Repository2026 · Astronomical catalogue

<h2 dir="ltr">Archive description</h2><p dir="ltr">This repository contains the full dataset, R-based analysis script, supporting information files, and figures associated with the manuscript <i>“Flexible behavior or flexible methods? A cross-taxon review of experimental designs in reversal learning,” </i>accepted for publication in <a href="https://doi.org/10.1162/OPMI.a.395" target="_blank" rel=

ZivaHub + Deakin Research Online + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Despite improvements in genomic surveillance coverage in dengue endemic settings, there is limited literature on the long-term evolutionary dynamics of DENV lineages that contribute to epidemics in hyperendemic settings. The present study aimed to address this knowledge gap by analysing serially collected DENV genomic surveillance data in Singapore, where DENV populations have closely

ZivaHub + HKU DataHub + DaYta Ya Rona + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This repository contains all data and scripts to reproduce the work presented in our study of Pygopodidae geckos <a href="https://www.biorxiv.org/content/10.64898/2026.06.22.733657v1" target="_blank" rel="noreferrer">see BioRxiv</a>. Additional material (figures, presentations, and past versions of the manuscript) can be found on the <a href="https://github.com/iangbrennan/pygopodidae

ZivaHub + HKU DataHub + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">Mitochondrial genomes of five Metrodorinae species, including Hyboella guangxiensis, Cotysoides guangxiensis, Bolivaritettix lativertex, Bolivaritettix sikkinensis and Systolederus spicupennis, were sequencing.</p>

HKU DataHub + figshare + Loughborough Research Repository + UP Research Data Repository2026 · Astronomical catalogue

<p dir="ltr">This dataset provides supplementary matrices for a phylogenomic study evaluating the taxonomic position of <i>Filibacter tadaridae</i> TB-66^T and its proposed reclassification as <i>Sporosarcina tadaridae</i> comb. nov. The pairwise 16S rRNA gene sequence similarity matrix was calculated using the EzBioCloud Pairwise nucleotide sequence alignment for taxonomy tool. The Aver

HKU DataHub + figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Individual alignments for the 173 proteins used to build a concatenated data set to reconstruct the phylogeny of Dictyostelia.</p>

HKU DataHub + figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Individual trimmed alignments in phylip format, for the 173 proteins used to build a concatenated data set to reconstruct the phylogeny of Dictyostelia.</p>

HKU DataHub + figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Data table that contains pfam hit from running InterProScan on prokaryotic genomes found in the<a href="https://www.nature.com/articles/s41467-019-13443-4" target="_blank" rel="noreferrer"> Zhu et al., (2019) microbial Web of Lif</a>e.</p><p dir="ltr">Contains information about Pfam ID, sequence, genome accession and protein ID. </p><p dir="ltr">Data used in <a href="https://www.pnas.

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Hox genes are central to metazoan body plan formation, patterning and evolution, playing a critical role in cell fate decisions early in embryonic development in invertebrates and vertebrates. While the archetypical Hox gene cluster consists of members of nine ortholog groups (HOX1-HOX9), arrayed in close linkage in the order in which they have their anterior-posterior patterning effe

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">CLANS clustering of fungal subtilases based on amino acid sequence similarities (the sequence dataset was adapted from the one of Li et al. 2009, Scientific Reports 7:45456).</p><ul><li>Subtilases.clans: Exported CLANS file after clustering and plot editing. This file can be opened and vidualized with CLANS (Frickey and Lupas 2004, Bioinformatics 20:3702-3704).</li></ul><p><br></p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Dataset for phylogenetic analysis of hybrid histidine kinases.</p><ul><li>HHKs_alignment.fasta: Alignment used for phylogenetic analysis (the dataset was adapted from Hérivaux et al. 2017, mBio 8:e01739-16)</li><li>HHKs_ML-tree.nwk: ML-tree inferred with IQ-TREE 2</li><li>HHKs_new-seqs.fasta: New sequences found in this study</li></ul><p><br></p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Dataset for phylogenetic analysis of 18S-28S rDNA sequences of <i>Ancylistes closterii</i> and other zygomycete fungi.</p><ul><li>18S-28S_concatenated-alignment.fasta: Alignment used for phylogenetic analysis</li><li>18S-28S_ML-tree.nwk: ML-tree inferred with IQ-TREE 2</li><li>18S-28S_partition.txt: Partition information of the alignment</li><li>18S_28S_Ancylistes_data.fasta: 18S and

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">In this study, we elucidated the evolutionary dynamics of plastomes in Anthemideae (Asteraceae) by assembling 35 new plastomes. The article has been submitted and is under review. </p>

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Dataset for phylogenetic analysis of PCWDEs (Plant Cell Wall Degrading Enzymes).</p><ul><li>GH44_alignment.fasta: GH44 gene alignment used for phylogenetic analysis</li><li>GH44_ML-tree.nwk: ML-tree of GH44 gene inferred with IQ-TREE 2</li><li>GH45_alignment.fasta: GH45 gene alignment used for phylogenetic analysis</li><li>GH45_ML-tree.nwk: ML-tree of GH45 gene inferred with IQ-TREE 2

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<pre><pre>Twelve annotated nucleotide assemblies for six Polyscias (Araliaceae) species: six complete plastid (chloroplast) genomes (~156 kb each) and six complete 45S nuclear ribosomal DNA cistrons (18S-ITS1-5.8S-ITS2-26S; ~5.8 kb each).<br><br>Every sequence was assembled by the authors from third-party, publicly available SRA reads that were generated by other groups; the source SRA run for eac

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Dataset accompanying related publication in Evolution:</p><p><br></p><p dir="ltr"><br></p><p dir="ltr">Ocean sunfish (family Molidae) are often perceived as “low-energy” drifters composed largely of connective tissue with noticeably missing fins and even cited as “mistakes” of natural selection. Because locomotory capacity has been identified as a driver of evolution in animal mitocho

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Dataset for phylogenomics analyses of <i>Ancylistes closterii</i> and other zygomycete fungi.</p><ul><li>supermatrix_origina.fasta: Concatenated alignment comprising 185,578 amino acids (aa) of 452 genes in the BUSCO fungi_odb10 database</li><li>preliminary_LGFR10.nwk: Maximum likelihood tree inferred with IQ-TREE 2 (LG+F+R10 model) using the alignment "supermatrix_origina.fasta".</li

figshare + Loughborough Research Repository2026 · Astronomical catalogue

<p dir="ltr">Glutniglossum spp. ITS LSU RPB1 TEF concatenated dataset</p>