Excel · study · 2026
Single-Cell Transcriptomic and Chromatin Accessibility Atlas of Peripheral Blood Mononuclear Cells Reveals Immune Cell Heterogeneity and Breed- Specific Characteristics in Duroc and Meishan Pigs
Listed in NCBI GEO
In this study, we applied scRNA-Seq to profile the PBMCs from Meishan and Duroc pigs which are two strains with distinctive immune traits, and applied scATAC-Seq to Duroc PBMCs.
Description
We expect this study will improve the understanding about the immune heterogeneity and inter-breed immune variations in pigs, and reveal novel immune cell populations, immune genes and regulators that would facilitate future biomedical studies.
MS(Meishan pig); DR(Duroc pig).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE196nnn/GSE196044 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE196044 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA803161 ncbi.nlm.nih.gov/bioproject/PRJNA803161 ↗
project · from NCBI GEO
- PubMed 42032457 pubmed.ncbi.nlm.nih.gov/42032457 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Genome binding/occupancy profiling by high throughput sequencing · Sus scrofa
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65% · Zoology 73%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE196044 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (73%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9823 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |