Omics · study · 2026
SMYD2 methylates KDM5A restricting its demethylase activity on the genome (and driving proliferation)
Listed in NCBI GEO
Members of the KDM5 family of Jumonji histone demethylases have been implicated in a variety of human diseases including multiple cancers.
Description
The regulation of KDM5 enzyme levels and activity, however, is poorly understood. Here we report that KDM5A is methylated by SMYD2 and that this methylation impacts histone demethylase activity.
A mutant KDM5A that can no longer be methylated at K1063 exhibits unique genomic sites of action, demethylates H3K4me3 more robustly and at new loci, has unique transcriptional effects and distinct protein-protein interactions. As a result, a number of cell proliferation pathways are affected and cancer cell growth is blunted. This study illustrates the functional consequences of post-translational modifications of lysine residues in enzymes impacting genomic histone demethylation, gene expression and signaling.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE297nnn/GSE297612 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297612 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1265261 ncbi.nlm.nih.gov/bioproject/PRJNA1265261 ↗
project · from NCBI GEO
- PubMed 41962864 pubmed.ncbi.nlm.nih.gov/41962864 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE297612 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |