Data · dataset · 2023
GSEA/GSVA-based Analysis of Primary Breast Tumors with/without Recurrence
Listed in Researchdata.se and Swedish National Data Service — shown once because both records carry DOI 10.17044/scilifelab.21904587
GSEA comparsion between primary breast tumors with a matched recurrence (S sample, n = 27) and tumors with no recurrence (V samples, n = 21).
Description
GSEA output is provided for RNA and protein mass spectrometry data (database: HALLMARKS). GSVA scores for key enriched pathways (E2F targets and allograft rejection) are provided too along with immunohistochemical analysis of poliferation marker Ki-67 and leukocyte counts.
This dataset was used for Figure 6 in the following manuscript: "Proteogenomics decodes the evolution of human ipsilateral breast cancer". De Marchi T, Pyl PT, Sjöström M, Reinsbach SE, DiLorenzo S, Nystedt B, Tran L, Pekar G, Wärnberg F, Fredriksson I, Malmström P, Fernö M, Malmström L, Malmström J, Nimèus E. accepted for publication
Links
Where it is published
- DOI doi.org/10.17044/scilifelab.21904587 ↗
DOI / persistent id · from researchdata se
Catalogue records · 2
- OAI-PMH record api.researchdata.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from researchdata se
- OAI-PMH record snd.se/oai-pmh?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3A… ↗
metadata API · from snd se
Topics
- From keywords
- Earth & Environmental Science · Earth & Environmental Science · Life Sciences · Life Sciences · Medicine & Health · Medicine & Health
- Inferred from text
- Cancer 75% · Mass spectrometry 75% · Oncology and carcinogenesis 72%
Provenance · 2 source records, 14 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| Researchdata.se | oai:researchdata.se:doi-10-17044-scilifelab-21904587/0 | 13 d ago | JSON v1 |
| Swedish National Data Service | oai:researchdata.se:doi-10-17044-scilifelab-21904587/0 | 2 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3211 | enrichment · researchdata se | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:earth-environmental | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · snd se | connector:snd_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · snd se | connector:snd_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · researchdata se | connector:researchdata_se@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · snd se | connector:snd_se@1.0.0 | |
| concepts[modality].local:modality:mass-spectrometry | enrichment · researchdata se | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/description |
| license | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/rights |
| publication_date | source · researchdata se | connector:researchdata_se@1.0.0 | |
| title | source · researchdata se | connector:researchdata_se@1.0.0 | /metadata/dc/title |