Omics · study · 2026
PARP inhibition induces cytotoxicity in mESCs by activating endogenous retroviruses [ATAC-seq]
Listed in NCBI GEO
PARP inhibitors (PARPi) have been approved to treat patients with BRCA-deficient cancers via synthetic lethality.
Description
How PARPi kill BRCA-proficient cells remains an important unanswered question. Here we provide evidence that naïve murine embryonic stem cells, although being homologous-recombination potent, are very sensitive to PARPi such as Talazoparib (Tal).
Tal acts on ARTD1 and activates p53 by blocking TOP2A dissociation from chromatin. Genome-wide CRISPR screening showed that the loss of TET1 reduces Tal induced cytotoxicity, which is recapitulated by the depletion of TDG. TET and TDG mediated DNA demethylation turnover renders the local chromatin accessible and facilitates p53 dependent transcription.
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Consequently, Tal treatment strongly activates the expression of endogenous retroviruses in a p53- and TET/TDG-dependent manner. The uncovered contribution of TET/TDG into Tal induced cytotoxicity sheds further light on future personalized medicine and suggests that TET/TDG mediated active DNA demethylation may represent a biomarker for the predication of sensitivity to PARPi.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166962 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166962 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA702478 ncbi.nlm.nih.gov/bioproject/PRJNA702478 ↗
project · from NCBI GEO
- PubMed 42234580 pubmed.ncbi.nlm.nih.gov/42234580 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE166962 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |