Excel · study · 2026
Transcriptome alterations induced by acute and persistent human bocavirus 1 infection in human airway epithelial cells
Listed in NCBI GEO
Human bocavirus 1 (HBoV1) is a common cause of respiratory tract infection in children.
Description
It replicates efficiently in human airway epithelial (HAE) cells and is shed into the airways for months after acute infection. It further persists in B cells of tonsillar germinal centers with unknown consequences.
Our aim was to compare how acute and persistent virus infections influence the cells. We performed total RNA sequencing to investigate the cellular transcriptomes of polarized HAE cells infected with HBoV1 at 7, 14 and 30 days post infection, and compared the biological pathways enriched across these different time points. We observed significant activation in the interferon signaling pathway and elevation of pattern recognition receptors, including toll-like receptor 2, only in the acute phase, whereas a slight elevation of the p53-signalling pathway was still observed after 30 days.
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The results indicate that the cells seem to reach an equilibrium state with the virus where viral activity and cellular impact are balanced.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE326nnn/GSE326404 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE326404 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1445212 ncbi.nlm.nih.gov/bioproject/PRJNA1445212 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE326404 | 10 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |