Omics · study · 2026
METTL3-mediated Epitranscriptomic Regulation Safeguards the Specification of Neural Cell Fate From Human Embryonic Stem Cells
Listed in NCBI GEO
Human brain development relies on precisely orchestrated cell fate decisions to achieve diverse neural lineages.
Description
N6-methyladenosine (m6A), the most abundant internal RNA modification, has emerged as a pivotal regulator neurodevelopment and neurological diseases. However, the molecular mechanisms governing the specification of human neural fate remain poorly understood.
Here, we systematically delineate the m6A modification landscapes during the differentiation of human embryonic stem cells (ESCs), and identify METTL3 as a critical regulator of neural lineage commitment. Utilizing brain organoid models, we demonstrate that METTL3 knockout severely impairs the development of brain organoids with excessive generation of inhibitory neurons accompanied by a decrease in excitatory neurons, a phenotype associated with neurological disorders.
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Moreover, we discover that METTL3 functions partially through the ESC-specific long non-coding RNA, LINC01108. Mechanistically, METTL3 mediates the m6A modifications on LINC01108, which are recognized by YTHDF2 for degradation. Knockout of METTL3 leads to decreased m6A modifications and increased levels of LINC01108 transcripts, which in turn results in impaired neural fate specification.
In summary, our findings uncover an METTL3-m6A-LINC01108 axis that safeguards the specification of neural cell fate.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE307nnn/GSE307604 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE307604 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1315160 ncbi.nlm.nih.gov/bioproject/PRJNA1315160 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Other
- From keywords
- Life Sciences
- Inferred from text
- Genetics 70%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE307604 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |