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Omics · study · 2026

METTL3-mediated Epitranscriptomic Regulation Safeguards the Specification of Neural Cell Fate From Human Embryonic Stem Cells

Listed in NCBI GEO

Human brain development relies on precisely orchestrated cell fate decisions to achieve diverse neural lineages.

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N6-methyladenosine (m6A), the most abundant internal RNA modification, has emerged as a pivotal regulator neurodevelopment and neurological diseases. However, the molecular mechanisms governing the specification of human neural fate remain poorly understood.

Here, we systematically delineate the m6A modification landscapes during the differentiation of human embryonic stem cells (ESCs), and identify METTL3 as a critical regulator of neural lineage commitment. Utilizing brain organoid models, we demonstrate that METTL3 knockout severely impairs the development of brain organoids with excessive generation of inhibitory neurons accompanied by a decrease in excitatory neurons, a phenotype associated with neurological disorders.

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Moreover, we discover that METTL3 functions partially through the ESC-specific long non-coding RNA, LINC01108. Mechanistically, METTL3 mediates the m6A modifications on LINC01108, which are recognized by YTHDF2 for degradation. Knockout of METTL3 leads to decreased m6A modifications and increased levels of LINC01108 transcripts, which in turn results in impaired neural fate specification.

In summary, our findings uncover an METTL3-m6A-LINC01108 axis that safeguards the specification of neural cell fate.

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Life Sciences
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Genetics 70%
Provenance · 1 source records, 9 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE30760412 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].anzsrc:group:3105enrichment · NCBI GEOtaxonomy-embedding@1.1.0title+keywords+description (70%)
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[method].geo_series_type:othersource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:9606source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title