← Search

Omics · study · 2026

Deletion of immune regulatory factor Fgl2 affects the mouse spleen immune profile

Listed in NCBI GEO

Transcription profiles identified 18 cell types, including 9 B cell subsets, 5 T cell subsets, pc cells, monocytes, natural killer (NK) cells, and dc cells.

Description

Compared with WT group, the proportion of naive B cells, transitional B cells, marginal B cells, follicular B cells, CD4-T naive, CD8-T naive, CD4-T regulatory subsets, NKT, NK and DC subsets in Fgl2 KO group decreased. The proportion of PCs, CD4-Tem and monocyte subsets increased.

Notably, we identified four new B cell subpopulations in the Fgl2 KO group that cannot be classified as classical B cell subpopulations and are therefore named B cell_sp1, B cell_sp2, B cell_sp3, and B cell_sp4.B cell_sp1 subgroup showed dominant clones of IGHA, IGHM and IGHD in the constant region, while the other 3 different subgroups and pc only showed dominant clones of IGHA in the constant region. This suggests that IGHA clones are most abundant and dominant in Fgl2 KO B cells.

Read the rest (2 more)

In addition, we analyzed in detail the number of different BCR heavy chain genes and related VH gene fragments in the Fgl2 KO-specific B cell subpopulation. At the same time, they also highly express Ccl5, Ccl4, Cxcl2, Cxcl10, Slpi, S100a8, S100a9, Fcer1g and IL-1b genes, which are involved in the regulation of immune process and molecular function. In addition, these specific B cells also highly express genes.

Such as PDCD1, HAVCR2, CTLA4 and ICOS, suggesting that these B cells are more likely to fail and may not survive for long.

Links

Topics

From keywords
Life Sciences
Provenance · 1 source records, 8 field assertions
SourceKeyLast seenRaw
NCBI GEOGSE27582714 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[field].local:field:life-sciencesmapping · NCBI GEOconnector:ncbi_geo@1.0.0
concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencingsource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[method].geo_series_type:othersource · NCBI GEOconnector:ncbi_geo@1.0.0/gdstype
concepts[organism].NCBITaxon:10090source · NCBI GEOconnector:ncbi_geo@1.0.0/taxon
descriptionsource · NCBI GEOconnector:ncbi_geo@1.0.0/summary
publication_datesource · NCBI GEOconnector:ncbi_geo@1.0.0
titlesource · NCBI GEOconnector:ncbi_geo@1.0.0/title