Omics · study · 2026
Distinct phenotype and effector function of CD4 coreceptor disparate iNKT cell subsets
Listed in NCBI GEO
Invariant natural killer T (iNKT) cells are thymus-derived innate-like T cells that lack CD8 and express either CD4 (CD4SP) or no coreceptors (DN).
Description
The role of coreceptors in iNKT cell development and effector functions, however, remains unclear. Here, we show that CD4 expression correlates with the subset identity of iNKT cells, specifically unveiling a dichotomy of CD4 coreceptors among IFNγ-producing iNKT cells that we refer to as NKT1.4+ and NKT1.4– cells, based on CD4 expression.
These CD4 disparate NKT1 cells markedly differed in their gene transcription profiles, surface phenotypes, and effector functions, revealing a CD4 coreceptor-associated divergence in iNKT cells. Moreover, CD4 expression was associated with enhanced TCR signaling in iNKT cells, such that CD4-deficiency heavily disturbed their generation and differentiation in the thymus. Collectively, these results reveal a previously unappreciated association between CD4 coreceptor expression and iNKT effector function, establishing CD4 as a functional marker in iNKT cell biology.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE339nnn/GSE339497 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339497 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1499074 ncbi.nlm.nih.gov/bioproject/PRJNA1499074 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE339497 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |