Data · collection · 2013
Venom on Ice - data collected from the CEAMARC voyage of the Aurora Australis, voyage 3 2007-2008
Listed in NASA Earthdata CMR
Accompanying excel spreadsheet details the DNA samples taken and venom glands obtained and associated date/location/depth collection site data.
Description
Each specimen will be DNA barcoded using the diagnostic 600bp region of the mitochondrial COI gene and sequences lodged on GenBank. DNA barcoding will aid in evaluating the extent of cephalopod biodiversity including revealing cryptic species and phylogeographic structure.
Confirmation of species identities is also essential as glands from multiple individuals will be required for detailed proteomic analysis of the proteins produced by the octopus posterior salivary glands. The chemical composition of the secretions will be determined through the application of multidisciplinary techniques, including cDNA library construction, mass spectrometry, molecular modelling and bioactivity testing.
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The studies will commence in 2008 and run for several years, being the major element in a PhD project run through Dr. Fry's laboratory. Data_Format Excel file with the following columns: Sample ID Diagnosis Description Other Ref Gland Storage Tissue Tissue Storage Voucher Preservation Images Order Family Genus Species Location Site Depth (start-stop) Latitude Longitude Date Time (UT) Capture Event Other Information
Links
Get the data
- Download point for the excel spreadsheet data.aad.gov.au/eds/4764/download ↗
download · from NASA CMR
Where it is published
- DOI doi.org/10.4225/15/5a1247986402b ↗
DOI / persistent id · from NASA CMR
Documentation and papers
- data.aad.gov.au /aadc/metadata/citation.cfm?entry_id=CEAMARC_CASO_200708_V3_Ven… ↗
Citation reference for this metadata record and dataset.
documentation · from NASA CMR
- data.aad.gov.au /eds/4765/download ↗
Download point for the referenced papers - AAD Staff Only
documentation · from NASA CMR
- Home page for project secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=2897 ↗
project · from NASA CMR
Catalogue records · 2
- CMR UMM-JSON cmr.earthdata.nasa.gov/search/concepts/C1214308502-AU_AADC.umm_json ↗
metadata API · from NASA CMR
- CMR record cmr.earthdata.nasa.gov/search/concepts/C1214308502-AU_AADC.html ↗
catalogue entry · from NASA CMR
Topics
- Stated by source
- BOTTOM TRAWL · Bristle Worms · Cephalopods · R/V Aurora Australis · Sea Anemones
- Inferred from text
- Image 65% · Mass spectrometry 75%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NASA Earthdata CMR | C1214308502-AU_AADC | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[instrument].gcmd_instrument:bottom-trawl | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/animals-invertebrates/cnidarians/anthozoans-hexacorals/sea-anemones | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/animals-invertebrates/mollusks/cephalopods | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[measured_variable].gcmd:earth-science/biological-classification/animals-invertebrates/segmented-worms-annelids/bristle-worms | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| concepts[modality].local:modality:image | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:mass-spectrometry | enrichment · NASA CMR | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[platform].gcmd_platform:r-v-aa | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| description | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/Abstract |
| license_text | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| publication_date | source · NASA CMR | connector:nasa_cmr@1.0.0 | |
| spatial | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/SpatialExtent |
| temporal | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/TemporalExtents |
| title | source · NASA CMR | connector:nasa_cmr@1.0.0 | /umm/EntryTitle |
| version_label | source · NASA CMR | connector:nasa_cmr@1.0.0 |