Data · dataset · 2024
RNA-seq of SCLC cells after treatment of cisplatin and disulfiram
Listed in ScienceDB
Small cell lung cancer H69 cells were treated with DMSO control, 2 μM Cisplastin, 0.025 μM Disulfiram, and Cisplastin combined with Disulfiram for 24 hours.
Description
Total RNA was extracted using RNA Easy Fast Tissue/cell Kit (Tiangen, Beijing, China). Enrich mRNA using VAHTS mRNA Capture Beads (Vazyme, Jiangsu, China).
Prepare the library using the VAHTS Universal V8 RNA Seq Library Prep Kit (Vazyme, Jiangsu, China), and then perform paired end sequencing on the Illumina NovaSeq 6000 machine (Illumina, CA, USA) to generate 150 bp paired end reads. Trim the original reading using Trim Galore (v0.6.7) to remove low-quality readings. Then, clean reads were aligned with the GRCh37 genome using STAR (v2.7.10b) and quantified using RSEM (v1.3.1).
Links
Where it is published
- DOI doi.org/10.57760/sciencedb.16529 ↗
DOI / persistent id · from scidb cn
Catalogue records · 1
- OAI-PMH record scidb.cn/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=10.57760%2… ↗
metadata API · from scidb cn
Topics
- From keywords
- Earth & Environmental Science · Engineering · Humanities · Life Sciences · Medicine & Health · Social Science
- Inferred from text
- Cancer 75% · Oncology and carcinogenesis 70% · RNA sequencing 65% · Sequencing 75%
Provenance · 1 source records, 15 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| ScienceDB | 10.57760/sciencedb.16529 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].anzsrc:group:3211 | enrichment · scidb cn | taxonomy-embedding@1.0.0 | title+keywords+description (70%) |
| concepts[field].local:field:earth-environmental | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:engineering | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:humanities | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[field].local:field:social-science | mapping · scidb cn | connector:scidb_cn@1.0.0 | |
| concepts[modality].local:modality:rna-seq | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[modality].local:modality:sequencing | enrichment · scidb cn | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/description |
| license_text | source · scidb cn | connector:scidb_cn@1.0.0 | |
| publication_date | source · scidb cn | connector:scidb_cn@1.0.0 | |
| title | source · scidb cn | connector:scidb_cn@1.0.0 | /metadata/dc/title |