Omics · study · 2026
Chromatin accessibility of ILC2 co-stimulated by GITR signaling under Activation condition [ATAC-Seq]
Listed in NCBI GEO
Innate-lymphoid cells (ILCs) are key regulators of tissue homeostasis/immunity but their anti-tumor roles are poorly defined.
Description
Here, we identify the GITR-ILC2-IL-9-eosinophil axis as a key driver of anti-tumor immunity. Specifically, GITR co-stimulation of ILC2s in the tumor microenvironment (TME) induces ATF3-dependent chromatin remodeling that causes the ILC2s to produce IL-9 but not canonical ILC2 cytokines (e.g. IL-5 and IL-13).
ILC2-derived IL-9 then promotes eosinophil cytotoxicity, as indicated by their elevated cytotoxic granule-associated gene expression and tumoricidal activity. The IL-9-stimulated eosinophils thus effect tumor control. These events are facilitated by TME-induced expression of IL-9 receptor on eosinophils.
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TCGA-data analysis showed that IL-9-signature expression associated with favorable prognosis in patients with melanoma and lung adenocarcinoma. Our findings thus establish the GITR-ILC2-IL-9 axis as a pivotal pathway that integrates innate lymphoid and granulocyte responses and drives tumor immunity. This pathway may be a promising therapeutic target for enhancing eosinophil-mediated tumor suppression.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE294nnn/GSE294941 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294941 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1252066 ncbi.nlm.nih.gov/bioproject/PRJNA1252066 ↗
project · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE294941 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |