Omics · study · 2026
Bulk RNA sequencing of human sensory neurons following varicella-zoster virus infection or exposure to patient-derived serum exosomes
Listed in NCBI GEO
Bulk RNA sequencing was performed to characterize transcriptional responses of differentiated human sensory neurons following either direct varicella-zoster virus infection or exposure to serum-derived exosomes from healthy controls, patients with acute herpes zoster, or patients with post-herpetic neuralgia.
Description
These datasets were generated to identify molecular pathways associated with direct viral infection and exosome-mediated neuronal dysfunction. reference genome and gene quantification by RSEM.
Differential expression and downstream pathway analyses were performed using DESeq2 and gene set enrichment analysis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE342nnn/GSE342782 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342782 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1508885 ncbi.nlm.nih.gov/bioproject/PRJNA1508885 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE342782 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |