Omics · study · 2026
Relation of small intestine neuroendocrine tumor (SI-NET) properties and epigenetics to normal human enteroendocrine cell differentiation [scATAC-seq]
Listed in NCBI GEO
Description
To investigate the relation of small intestine neuroendocrine tumor (SI-NET) properties and epigenetics to normal human enteroendocrine cell differentiation [scATAC-seq] We established Neurog3ER inducible cell lines and then performed chromatin analysis at single cell level using data obtained from normal EEC single cell ATAC-seq at various time points.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE238nnn/GSE238273 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE238273 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA998716 ncbi.nlm.nih.gov/bioproject/PRJNA998716 ↗
project · from NCBI GEO
- PubMed 42166365 pubmed.ncbi.nlm.nih.gov/42166365 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Genome binding/occupancy profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE238273 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].anzsrc:group:3105 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (70%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:genome-binding-occupancy-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |