Omics · study · 2026
A Rat Embryonic Enteric Nervous System Culture Platform for Modeling Neuronal Subtype Diversity and Network Activity Maturation
Listed in NCBI GEO
We present an in vitro culture system of enteric neurons and glia derived from migratory cells isolated from the embryonic rat small intestine.
Description
This system gives rise to functional neuronal networks composed of multiple enteric neuronal subtypes and closely integrated with enteric glial cells. Single-cell RNA sequencing identifies diverse neuronal populations, including ChAT-positive excitatory neurons, NOS-positive inhibitory neurons, and VIP-positive interneurons, as well as a glial cell population.
Transcriptomic analysis further defines cell type-specific marker profiles and candidate regulators of enteric neuronal and glial development. Electrophysiological recordings demonstrate maturation of spontaneous network activity, with contributions from cholinergic, nitrergic, and VIPergic neuronal populations. Together, these findings establish a tractable in vitro platform for investigating neuronal subtype specification, the emergence of cellular diversity, neuro-glial interactions and functional electrophysiological network organization.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE336nnn/GSE336575 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE336575 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1482004 ncbi.nlm.nih.gov/bioproject/PRJNA1482004 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Rattus norvegicus
- From keywords
- Life Sciences
- Inferred from text
- Biochemistry and cell biology 72% · RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75%
Provenance · 1 source records, 11 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE336575 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3101 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (72%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10116 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |