Omics · study · 2026
Transcriptomes of different glioblastoma cell lines
Listed in NCBI GEO
Glioblastoma (GB) is the most aggressive type of brain cancer with a devastating prognosis.
Description
Myeloid cells, especially monocytes and macrophages, comprise the majority of immune cells within the GB tumor microenvironment (TME), where they contribute to the development of an immunosuppressive milieu hindering potential anti-tumor immune responses. Type I interferons (IFN) usually facilitate a pro-inflammatory shift in monocytes and macrophages and allow for anti-tumor functions.
Using RNA-sequencing, we observed that type I IFN-stimulated genes (ISGs) are globally downregulated in primary human monocytes co-cultured with GB cells both upon direct cell-cell contact and upon the exchange of soluble factors. Surprisingly, the reduction of type I IFN responses did not result from changes in interferon-α/β-receptor (IFNAR) availability and activation. Instead, we identified GM-CSF as a critical, GB cell-derived factor, which decreased ISG expression in monocytes at extremely low concentrations (< 10 pg/mL) via induction of the TGF-β signaling pathway.
Read the rest (1 more)
Importantly, type I IFN response gene expression and GM-CSF activity in human GB biopsies appeared to be mutually exclusive. In detail, active GM-CSF signaling inhibited ISG expression in the same cell as well as in neighboring monocyte-derived macrophages. In conclusion, our data provide evidence for a so far unknown GM-CSF- and TGF-β-dependent type I IFN inhibitory mechanism in GB with potential implications for future therapeutic approaches.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE309nnn/GSE309038 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE309038 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1333840 ncbi.nlm.nih.gov/bioproject/PRJNA1333840 ↗
project · from NCBI GEO
- PubMed 42399654 pubmed.ncbi.nlm.nih.gov/42399654 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE309038 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |