Omics · study · 2026
Long-term immune and extracellular matrix remodeling in the mouse cornea after open-field blast injury
Listed in NCBI GEO
Open-field blast injury (OFBI) can produce long-term ocular surface abnormalities, but the chronic molecular response of the cornea remains poorly defined.
Description
In this study, awake, non-sedated C57BL/6J mice were exposed to a single open-field blast generated by detonation of 350 g Composition C-4 explosive at a 3 m standoff distance. Corneas were collected 12 months after blast exposure and compared with age-matched naïve controls using bulk RNA sequencing.
Differential expression analysis identified persistent transcriptomic remodeling in OFBI corneas, with clear separation from naïve controls by principal component analysis and hierarchical clustering. The data analysis demonstrated that OFBI induces durable corneal transcriptomic remodeling 12 months after injury.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE339nnn/GSE339117 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339117 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1497698 ncbi.nlm.nih.gov/bioproject/PRJNA1497698 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Mus musculus
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE339117 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |