Table · dataset · 2026
Telomere-to-telomere gapless genome assemblies of Coreius heterodon and Coreius guichenoti
Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.30944231.v2
Description
<p dir="ltr"><i>Coreius heterodon</i> and <i>Coreius guichenoti</i> are endemic cyprinid fishes of the upper Yangtze River Basin. <i>C. guichenoti</i> is classified as Endangered (EN) by the IUCN and listed as a national second-class protected wild animal in China, whereas <i>C. heterodon</i> is classified as Not Evaluated (NE) by the IUCN. However, genomic resources for these species have remained limited, constraining evolutionary and conservation genetic studies.
Here, we present near telomere-to-telomere genome assemblies for both species. The assemblies span 1.09 Gb for <i>Coreius heterodon</i> and 1.08 Gb for <i>Coreius guichenoti</i>, with contig N50 values of 43.10 Mb and 42.62 Mb, respectively, and are anchored to 25 chromosomes. Repetitive elements account for approximately 58% of each genome, and 25,876 and 25,778 protein-coding genes were annotated, respectively.
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Both assemblies exhibit exceptional completeness, with BUSCO scores exceeding 98.9%, confirming their high quality and reliability. Phylogenomic analyses based on single-copy orthologs resolved the placement of <i>Coreius</i> within <i>Gobioninae</i> and estimated that the two species diverged approximately 21 million years ago. Comparative analyses revealed lineage-specific gene family evolution and positive selection, mainly related to reproduction, immunity, and hormone pathways.
These genome assemblies provide high-resolution resources for future studies on genome evolution, adaptive diversification, and conservation genomics of endemic fishes in the Yangtze River Basin<i>.</i></p>
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Where it is published
- DOI doi.org/10.6084/m9.figshare.30944231.v2 ↗
DOI / persistent id · from figshare com
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from figshare com
Topics
- From keywords
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Provenance · 2 source records, 30 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| figshare | oai:figshare.com:article/30944231 | 9 d ago | JSON v1 |
| Loughborough Research Repository | oai:figshare.com:article/30944231 | 9 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].anzsrc:field:310509 | mapping · repository lboro ac uk | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].anzsrc:field:310509 | mapping · figshare com | vocabulary-mapper@1.0.0 | keywords['Genomics'] |
| concepts[field].local:field:astronomy | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:chemistry | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:computer-science-ai | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:earth-environmental | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:economics-finance | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:engineering | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:humanities | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:humanities | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:materials-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:mathematics-statistics | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:ocean-atmospheric | mapping · figshare com | connector:figshare_com@1.0.0 | |
| concepts[field].local:field:psychology-behavioral | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · repository lboro ac uk | connector:repository_lboro_ac_uk@1.0.0 | |
| concepts[field].local:field:social-science | mapping · figshare com | connector:figshare_com@1.0.0 | |
| description | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/description |
| license | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/rights |
| publication_date | source · figshare com | connector:figshare_com@1.0.0 | |
| title | source · figshare com | connector:figshare_com@1.0.0 | /metadata/dc/title |