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Table · dataset · 2026

Telomere-to-telomere gapless genome assemblies of Coreius heterodon and Coreius guichenoti

Listed in figshare and Loughborough Research Repository — shown once because both records carry DOI 10.6084/m9.figshare.30944231.v2

Description

<p dir="ltr"><i>Coreius heterodon</i> and <i>Coreius guichenoti</i> are endemic cyprinid fishes of the upper Yangtze River Basin. <i>C. guichenoti</i> is classified as Endangered (EN) by the IUCN and listed as a national second-class protected wild animal in China, whereas <i>C. heterodon</i> is classified as Not Evaluated (NE) by the IUCN. However, genomic resources for these species have remained limited, constraining evolutionary and conservation genetic studies.

Here, we present near telomere-to-telomere genome assemblies for both species. The assemblies span 1.09 Gb for <i>Coreius heterodon</i> and 1.08 Gb for <i>Coreius guichenoti</i>, with contig N50 values of 43.10 Mb and 42.62 Mb, respectively, and are anchored to 25 chromosomes. Repetitive elements account for approximately 58% of each genome, and 25,876 and 25,778 protein-coding genes were annotated, respectively.

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Both assemblies exhibit exceptional completeness, with BUSCO scores exceeding 98.9%, confirming their high quality and reliability. Phylogenomic analyses based on single-copy orthologs resolved the placement of <i>Coreius</i> within <i>Gobioninae</i> and estimated that the two species diverged approximately 21 million years ago. Comparative analyses revealed lineage-specific gene family evolution and positive selection, mainly related to reproduction, immunity, and hormone pathways.

These genome assemblies provide high-resolution resources for future studies on genome evolution, adaptive diversification, and conservation genomics of endemic fishes in the Yangtze River Basin<i>.</i></p>

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Provenance · 2 source records, 30 field assertions
SourceKeyLast seenRaw
figshareoai:figshare.com:article/309442319 d agoJSON v1
Loughborough Research Repositoryoai:figshare.com:article/309442319 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · figshare comconnector:figshare_com@1.0.0
concepts[field].anzsrc:field:310509mapping · repository lboro ac ukvocabulary-mapper@1.0.0keywords['Genomics']
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concepts[field].local:field:computer-science-aimapping · figshare comconnector:figshare_com@1.0.0
concepts[field].local:field:computer-science-aimapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:life-sciencesmapping · repository lboro ac ukconnector:repository_lboro_ac_uk@1.0.0
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concepts[field].local:field:social-sciencemapping · figshare comconnector:figshare_com@1.0.0
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