Omics · study · 2026
HOPX regulates the development and lineage progression of human stem cell-derived outer radial glia-like cells
Listed in NCBI GEO
Outer radial glia (oRG) are highly abundant in the human fetal cortex but rare in rodents, yet their molecular regulation remains poorly understood.
Description
Although the homeodomain-only protein X (HOPX) is a well-established marker of oRG, its functional role in human cortical development remains undefined. Here, we investigated the role of HOPX in the development and lineage progression of human oRG-like cells derived from pluripotent stem cells in vitro.
Using CRISPR/Cas9-mediated gene editing, we show that HOPX loss impairs the development, expansion, and lineage potential of oRG-like cells in both two-dimensional neural cultures and three-dimensional cortical organoids. HOPX knockout neural precursors exhibit reduced proliferation, diminished neurogenesis, and premature differentiation toward astrocytic and oligodendrocytic lineages. Consistent with these findings, HOPX-deficient cortical organoids display reduced outer subventricular zone size, decreased neuronal output, and early gliogenesis.
Read the rest (1 more)
Mechanistically, HOPX loss leads to downregulation of mTORC1–4EBP1 and mTORC2–AKT/PKCα signaling. Transcriptomic analysis identifies HOPX-regulated molecular programs associated with gliogenic competence, the mTOR pathway, and Wnt signaling. Together, these findings identify HOPX as an important regulator of oRG-like cells maintenance and the balance between neurogenic and gliogenic fates, and provide insight into how lineage-specific molecular programs regulate human neural progenitor expansion.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE339nnn/GSE339244 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339244 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1498028 ncbi.nlm.nih.gov/bioproject/PRJNA1498028 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE339244 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |