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Data · dataset · 2024

GDC TCGA cancer datasets for GenMorw

Listed in ScienceDB

Description

We downloaded and organized 33 cancer data from GDC TCGA via the UCSC Xena platform (xena.ucsc.edu/) for input into our GenMorw algorithm. Users can decompress the files and place them in the 'Cancer Data' folder within the GitHub repository to obtain prioritization of driver gene predictions.It comprises 33 directories (GDC_CANCER), along with a methylation annotation file (illuminaMethyl450_hg38_GDC) and a gene coding annotation file (gencode.v22.annotation.gene.probeMap).Each directory includes a download information file (informations.tsv), cancer patient phenotypes (TCGA-CANCER.GDC_phenotype.tsv.gz), copy number variation (TCGA-CANCER.gistic.tsv.gz), gene expression (TCGA-CANCER.htseq_fpkm.tsv.gz), methylation (TCGA-CANCER.methylation450.tsv.gz), miRNA (TCGA-CANCER.mirna.tsv.gz), gene mutation data (TCGA-CANCER.mutect2_snv.tsv.gz), and patient survival data (TCGA-CANCER.survival.tsv).

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Where it is published

Catalogue records · 1

Topics

Inferred from text
Cancer 75% · Oncology and carcinogenesis 70%
Provenance · 1 source records, 13 field assertions
SourceKeyLast seenRaw
ScienceDB10.57760/sciencedb.0935410 d agoJSON v1
FieldAssertionExtractorEvidence
access_levelsource · scidb cnconnector:scidb_cn@1.0.0
concepts[disease].local:disease:cancerenrichment · scidb cnkeyword-concept-rules@1.0.0title+description (75%)
concepts[field].anzsrc:group:3211enrichment · scidb cntaxonomy-embedding@1.0.0title+keywords+description (70%)
concepts[field].local:field:earth-environmentalmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:engineeringmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:humanitiesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:life-sciencesmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:medicine-healthmapping · scidb cnconnector:scidb_cn@1.0.0
concepts[field].local:field:social-sciencemapping · scidb cnconnector:scidb_cn@1.0.0
descriptionsource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/description
licensesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/rights
publication_datesource · scidb cnconnector:scidb_cn@1.0.0
titlesource · scidb cnconnector:scidb_cn@1.0.0/metadata/dc/title