Omics · study · 2026
Single-cell atlas of black rockfish (Sebastes schlegelii) ovarian stroma across reproductive states
Listed in NCBI GEO
This project contains single-cell RNA sequencing (scRNA-seq) data of the ovarian stroma from the viviparous teleost, black rockfish (Sebastes schlegelii).
Description
To define how the ovarian stroma is reprogrammed across reproduction, we profiled stromal cells spanning three distinct biological states: unfertilized, normal-gestation, and abnormal-gestation (characterized by spontaneous embryonic mortality and avascularity). This dataset aims to characterize the stromal cell composition, developmental trajectories, and immune-vascular interactions critical for maintaining intraovarian gestation, providing insights into the evolutionary biology of teleost viviparity.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE324nnn/GSE324772 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE324772 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1437021 ncbi.nlm.nih.gov/bioproject/PRJNA1437021 ↗
project · from NCBI GEO
- PubMed 42082676 pubmed.ncbi.nlm.nih.gov/42082676 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75% · Single-cell RNA sequencing 75% · Zoology 71%
Provenance · 1 source records, 10 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE324772 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |