Omics · study · 2026
Shared and divergent transcriptional programs of oligodendrocyte differentiation across vertebrate species revealed by scRNA-seq analysis
Listed in NCBI GEO
Myelination is essential for neural function in the vertebrate central nervous system, yet the molecular details of how the oligodendrocyte differentiation program has evolved remains poorly understood.
Description
Here, we performed a cross-species single-cell transcriptomic analysis of oligodendrocyte lineage cells in the spinal cord of five vertebrate species: fugu, mudskipper, chicken, mouse, and human. Pseudotime trajectory analysis revealed a shared OPC to COP to MOL differentiation trajectory across all species.
Among stage-specific DEGs, 302 high-shared genes were organized into four co-expression modules, with 46 evolutionary core genes enriched for oligodendrocyte differentiation and Wnt signaling. Notably, 184 amniote-exclusive genes were enriched for synaptic vesicle transport and locomotory behavior, predominantly at the OPC stage, compared with only 18 teleost-exclusive genes, indicating that amniotes have expanded the oligodendrocyte differentiation program at the progenitor stage.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE328nnn/GSE328630 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE328630 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1456018 ncbi.nlm.nih.gov/bioproject/PRJNA1456018 ↗
project · from NCBI GEO
- PubMed 42196265 pubmed.ncbi.nlm.nih.gov/42196265 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Gallus gallus
- From keywords
- Life Sciences
- Inferred from text
- Single-cell RNA sequencing 65% · Zoology 71%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE328630 | 15 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].anzsrc:group:3109 | enrichment · NCBI GEO | taxonomy-embedding@1.1.0 | title+keywords+description (71%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:single-cell-rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9031 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |