MRSP WGS-AST boundary benchmark: reproducibility package (revision version)

Reproducibility package for the Microbial Genomics manuscript MGEN-D-26-00487 (de Souza and Santoro): Staphylococcus pseudintermedius whole-genome sequencing antimicrobial susceptibility boundary benchmark with a training-only-dictionary pangenome projection, restricted-shell model inputs, frozen prediction chains and outcome evaluation. Contains documentation, executable code (MIT License), the data reuse notice, the computational protocol, environment specification, review and acceptance records, and the current four main figures.

Start with README.md and COMPUTATIONAL_PROTOCOL.md; PAYLOAD_MANIFEST.json and SHA256SUMS.txt bind the current distribution. Provenance note: internal process records (two decision records and five review/audit records) are deposited in impersonal documentation form; their decisions, dates, authorizations, verdicts and verification-limitation statements are unchanged (MANIFEST_NOTES.md section 6). No scientific data, code, model, prediction or evaluation artifact in this deposit was regenerated or altered relative to the analyses reported in the manuscript.