Omics · study · 2026
Investigating PRELP–TLR2 interactions in the transcriptional control of melanoma immunogenicity
Listed in NCBI GEO
Proline/arginine-rich end leucine-rich repeat protein (PRELP) is an extracellular matrix-associated protein involved in tissue remodeling and immune regulation.
Description
This study investigates PRELP-associated transcriptional changes in human melanoma using bulk RNA sequencing of PRELP-low, PRELP-high, and PRELP + Toll-like receptor 2 (TLR2) co-transfected BUF1088 cells. PRELP-high cells were generated by experimental PRELP overexpression, while the PRELP + TLR2 group was generated by co-transfection with PRELP and TLR2 expression constructs.
Inclusion of the co-transfected samples enables investigation of how TLR2 expression influences PRELP-associated transcriptional programs. Comparative analysis of PRELP-high versus PRELP-low cells revealed broad transcriptomic remodeling, including increased expression of interferon-responsive genes and enrichment of JAK–STAT signaling, chemokine signaling, and MHC class I antigen processing and presentation pathways. These data support a role for PRELP in promoting tumor-intrinsic immune-reactive transcriptional programs and provide a resource for investigating the relationship between extracellular matrix components, TLR2 signaling, and melanoma immune regulation.
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This work was supported by German Research Foundation (DFG) (KS): 558635546 and EFRE Immu-pATienT (BS, CW): ZS/2024/01/183830.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE347nnn/GSE347202 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347202 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1529086 ncbi.nlm.nih.gov/bioproject/PRJNA1529086 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- RNA sequencing 75% · Sequencing 75%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE347202 | 7 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |