Omics · study · 2026
Gene expression profile at the single-cell level of Shiga toxin 2+ white cells in the blood
Listed in NCBI GEO
Shiga toxin (Stx)-induced hemolytic uremic syndrome (HUS) poses a grave, life-threatening complication for which a definitive treatment remains elusive.
Description
To exert its cytotoxic effect on renal cells, Stx must be delivered from infected intestines to the kidney as the passive toxin dissemination has been excluded. The mechanism underlying Stx delivery, however, remains unclear.
Here we pinpoint monocytes as the primary carriers responsible for transporting Stx2 to the renal region. Through single-cell sequencing analysis of peripheral white blood cells that have bound to Stx2 and have been sorted by flow cytometry, we observe that nearly all monocytes exhibit binding to Stx2, whereas less than 10% of neutrophils are associated with Stx2, albeit with a lower affinity.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE252nnn/GSE252352 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252352 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1060273 ncbi.nlm.nih.gov/bioproject/PRJNA1060273 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE252352 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |