Omics · study · 2026
In vitro induction of human germinal centre B-cells
Listed in NCBI GEO
During antibody responses, germinal centres (GCs) act as a key site for somatic hypermutation and affinity maturation of B-cells 1.
Description
However, due to their lymphoid tissue localization, experimental manipulation of human germinal centre B-cells has proven difficult, in part due to a lack of an effective method to induce these cells 2. Here we describe a simple in vitro method, modelling T-cell derived signalling, that allows the conversion of human naive B-cells into in vitro BCL6+ GCB-cells (iGCB).
Through side-by-side proteomic and transcriptional single cell analysis of iGCB and GCB from human tonsils, we demonstrate that iGCB-cells have comparable levels of the surface markers, transcription factors, DNA damage and repair molecules, surface glycosylation and trafficking molecules that define human GCB-cells. Using this system, we demonstrate both the signals critical for human GCB formation and a range of interventions that block GCB induction.
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By tracking plasmablast differentiation, we demonstrate that iGCB derived plasmablasts share markers with tonsil plasmablasts. We anticipate iGCB-cells as a valuable tool for a range of detailed investigations of human B-cell subpopulation formation and behaviour.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE297nnn/GSE297685 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297685 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1265685 ncbi.nlm.nih.gov/bioproject/PRJNA1265685 ↗
project · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE297685 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |