Imaging · study · 2026
10X Visium spatial transcriptomics of mouse thoracic spine intervertebral disc, IVD2 (area D1)
Listed in NCBI GEO
Spatial gene expression profiling of mouse thoracic spine tissue using the 10x Genomics Visium platform (FFPE, probe-based chemistry).
Description
Library IVD2 was profiled on Visium slide V11A19-364 capture area D1. This capture area contains both mutant and control tissue regions.
Raw FASTQs comprise two sequencing lanes (L001 and L002) of the same IVD2 library (8 files total).
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE335nnn/GSE335345 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335345 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1477970 ncbi.nlm.nih.gov/bioproject/PRJNA1477970 ↗
project · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
- Inferred from text
- Sequencing 75%
Provenance · 1 source records, 8 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE335345 | 14 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:sequencing | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (75%) |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |