Data · dataset · 2026
Table 1_Transcriptomic evidence of an IFN-gamma-associated inflammatory state in active visceral leishmaniasis: an exploratory comparison with pediatric HLH.docx
Listed in GRANTS Data
Description
Background<p>Visceral leishmaniasis (VL) can progress to secondary hemophagocytic lymphohistiocytosis (HLH), but transcriptomic similarities between active VL and pediatric HLH remain uncertain.</p>Methods<p>We integrated VL whole-blood expression data (GSE125992), sorted CD68-positive monocyte bulk-expression data from pediatric HLH and severe sepsis (GSE150707), and supportive Leishmania-infected mouse spleen single-cell data (GSE240385).
Differential expression, pathway enrichment, an exploratory 132-gene HLH-versus-sepsis-derived ssGSEA score, FARDEEP-LM22 deconvolution, signature-excluded WGCNA, CellChat, and a refitted three-gene classifier were evaluated.</p>Results<p>Active VL showed IFN-gamma-associated expression changes, including higher CXCL9 and CXCL10. The exploratory 132-gene score was higher in ActiveCase than EHC samples (Mann-Whitney P = 0.000637).
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Across 22 deconvolved cell types, only M1 macrophages showed an FDR-supported positive correlation with this score (rho = 0.787, BH q = 0.000503). After all 132 score genes were excluded before network construction, a 124-gene magenta module remained associated with the score (rho = 0.837, BH q = 4.29 × 10^-5). A refitted IFNG/GBP5/MX2 classifier achieved a same-study validation AUC of 0.917 (bootstrap 95% CI 0.733-1.000), but the validation set contained only 16 samples.</p>Conclusion<p>These public datasets support an IFN-gamma-associated inflammatory state in active VL and exploratory cross-compartment convergence with pediatric HLH.
The 132-gene score, deconvolution, network, and classifier results are hypothesis-generating and do not establish HLH specificity, cellular causality, independent external validity, or clinical HLH prediction.</p>
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Where it is published
- DOI doi.org/10.3389/fcimb.2026.1924856 ↗
DOI / persistent id · from grantsdata jst go jp
Catalogue records · 1
- OAI-PMH record api.figshare.com/v2/oai?verb=GetRecord&metadataPrefix=oai_dc&identifier=oai%3Af… ↗
metadata API · from grantsdata jst go jp
Topics
- From keywords
- Clinical microbiology · Earth & Environmental Science · Life Sciences · Medicine & Health
- Inferred from text
- Tabular 65%
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Provenance · 1 source records, 10 field assertions
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| GRANTS Data | oai:figshare.com:article/34038834 | 9 d ago | JSON v1 |
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| concepts[field].local:field:life-sciences | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[field].local:field:medicine-health | mapping · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| concepts[modality].local:modality:tabular | enrichment · grantsdata jst go jp | keyword-concept-rules@1.0.0 | title+description (65%) |
| description | source · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | /metadata/dc/description |
| license | source · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | /metadata/dc/rights |
| publication_date | source · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | |
| title | source · grantsdata jst go jp | connector:grantsdata_jst_go_jp@1.0.0 | /metadata/dc/title |