Omics · study · 2026
RNA-seq profiling of osteosarcoma and healthy bone samples from a Central Mexican cohort
Listed in NCBI GEO
This bulk RNA-seq dataset contains transcriptomic profiles from osteosarcoma tumor samples and healthy bone reference samples from a Central Mexican cohort.
Description
Gene-level raw count and TPM-normalized expression matrices were generated from paired-end RNA-seq reads processed through a standardized quality-control, alignment, and quantification workflow. The dataset supports analyses of differential gene expression and molecular pathways involved in osteosarcoma biology, bone remodeling, extracellular matrix organization, immune regulation, and osteo-immune programs.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE337nnn/GSE337651 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE337651 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1490546 ncbi.nlm.nih.gov/bioproject/PRJNA1490546 ↗
project · from NCBI GEO
- PubMed 42510987 pubmed.ncbi.nlm.nih.gov/42510987 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Expression profiling by high throughput sequencing · Homo sapiens
- From keywords
- Life Sciences
- Inferred from text
- Cancer 65% · RNA sequencing 65%
Provenance · 1 source records, 9 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE337651 | 13 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[disease].local:disease:cancer | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:expression-profiling-by-high-throughput-sequencing | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[modality].local:modality:rna-seq | enrichment · NCBI GEO | keyword-concept-rules@1.0.0 | title+description (65%) |
| concepts[organism].NCBITaxon:9606 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |