Data · study · 2026
m6A RNA methylation in the maintenance of X-chromosome inactivation and X to autosome dosage compensation in early embryogenesis [MeRIP-Seq]
Listed in NCBI GEO
In females, inactivation of one X-chromosome balances the dosage of X-linked genes similar to males.
Description
In addition, transcriptional upregulation balances the dosage of genes expressed from the single active-X to the double copy of autosomes in both sexes. However, the factors and mechanisms involved in the maintenance of X-chromosome inactivation (XCI) and X to autosome dosage compensation remain poorly understood.
In this study, we report the contribution of m6A RNA methylation in maintenance of XCI and X to autosome dosage compensation in early embryonic and extraembryonic lineages. In the study, we find that m6A RNA methylation has a minimal role to play in maintenance of silencing of the inactivated-X chromsoome in TSC, XEN and EpiSC . Moreover, we also show that the X-linked transcripts are less enriched with m6A than the autosomal transcripts suggesting its role in increased X-transcript stability and hence upregulation.
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In addition, surprisingly we observed that X-linked transcripts without m6A are fully dosage compensated than the transcripts with m6A which undergo partial X to autosome dosage compensation in TSC, XEN and EpiSC. Further, we also found that global depletion of m6A level in TSC, XEN and EpiSC has a minor effect on the X to autosome dosage balance implicating the minor contribution of m6A RNA methylation during early embryogenesis.
Links
Get the data
- GEO FTP directory ftp.ncbi.nlm.nih.gov/geo/series/GSE295nnn/GSE295197 ↗
download · from NCBI GEO
Where it is published
- GEO accession page ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE295197 ↗
landing page · from NCBI GEO
Documentation and papers
- PRJNA1253692 ncbi.nlm.nih.gov/bioproject/PRJNA1253692 ↗
project · from NCBI GEO
- PubMed 41386228 pubmed.ncbi.nlm.nih.gov/41386228 ↗
publication · from NCBI GEO
Topics
- Stated by source
- Mus musculus · Other
- From keywords
- Life Sciences
Provenance · 1 source records, 7 field assertions
| Source | Key | Last seen | Raw |
|---|---|---|---|
| NCBI GEO | GSE295197 | 12 d ago | JSON v1 |
| Field | Assertion | Extractor | Evidence |
|---|---|---|---|
| access_level | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[field].local:field:life-sciences | mapping · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| concepts[method].geo_series_type:other | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /gdstype |
| concepts[organism].NCBITaxon:10090 | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /taxon |
| description | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /summary |
| publication_date | source · NCBI GEO | connector:ncbi_geo@1.0.0 | |
| title | source · NCBI GEO | connector:ncbi_geo@1.0.0 | /title |