Genomic annotation of Wuhua Yellow chicken (<i>Gallus gallus domesticus</i>)

The nuclear assembly was generated from PacBio HiFi and Hi-C data and deposited at DDBJ/ENA/GenBank under accession JCCBWL000000000 (version JCCBWL010000000).

Raw sequencing data are available under NCBI BioProject PRJNA1510564.</p><p dir="ltr">Files included here:</p><ul><li>WHYC_JCCBWL000000000_chromosome_assembly.fa.gz: chromosome-level nuclear genome assembly (scaffold-level FASTA)</li><li>chromosome_assignment.csv: correspondence between assembled scaffolds and chromosomes, based on synteny to the Huxu reference genome</li><li>finally.gff / finally.faa / genome.cds: protein-coding gene annotation, protein sequences and CDS</li><li>final_clean_ncRNA.gff3: non-coding RNA annotation</li><li>reapeat.gff: repetitive-element annotation</li><li>mtDNA.fasta: complete mitochondrial genome sequence (16,786 bp)</li><li>mtDNA.fa.gbf: mitochondrial genome annotation in GenBank format</li></ul><p dir="ltr">Scaffold names in the nuclear FASTA can be converted to chromosome names using chromosome_assignment.csv.